RNA id: AMCG00013428


Basic Information

Item Value
RNA id AMCG00013428
length 2049
RNA type mRNA
GC content 0.65
exon number 13
gene id AMCG00013428
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30749783 ~ 30760059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGTCAGACAGTCAGCGGGCAGAAGCGACCCTCGCAGACTCGCCCAGCCCGGCCGAGCCACAGAGCCACGCCCTGCGCCACTGGGAGCGCCACATGGCCGAGCGCCGCCGCCAGCAGGACTTCCTGTCTCGTGAGTTCCCCCTGCCACCGCACCTCCTGCCTGCCCAGCCGAACCGCAGGGACCCCACCACTCACACTGTGTTTCAGGGCTCACACTGCAGGACACCCGTGTGCCCGGCGCACCCCTCacgctctgtgctgtgtgttgcagggCTGCTGCAGAAGCCGGTGCCGGAGCTGGTGATGAACCAGGCGGGGGGATTCCGGGCAATGCAGGAGCAGAGGGAGCTGATCAGCCGTGGGCTCCCAGCTCTGCAGGACGGCCAGgagATCGATGGGCTGGAGGTCATTGGCTCAGGTCAGCCGTTCACCTGCGTCTCTGCAGAGTGCTGTCCTCTCCAGGAGCAGGTCACCCAGGAGGGGCCGCAGGGTCCAGAGGAACCGGAGACCCATGACATGCTGCGGTGGTCATGTGACATGTGGGTGTGTCGTTCCAGAGACCCGCTGGCAGACAGCCCTGACAGAGACCCGCTGGCTGACTACCCTGATGTGATGATGGAGGCACTGCTGCTTCCCTCCCTGCAGTTCTGTGGCCAGCCAGCTCGCTGGATCGGCAGCTGCTCCTCACACAAGGGTGAGGTGGGCGTGGCGGCCAGGCTGACCTTTGAGGCGATGGCCGGGGACCAGGCCTCATCCCACCTGGAGCTGAGCAACGACGGCAGCACGGCCATCTACTACAGCTGGCAGCGCCTCCCCATCCCCCACAGCTTCCGCCCAAACCCGAGAGACGTCCACAAGCAGAACTTCTACTTCAACTCCAGCCCAGGGGTCATCCTGCCCGGTGACACCCAGCAGATCCTCTTCACCTTCAAGTCCCAGCGACCGGGGGTCTTCAGCGAGGTCTGGGCCCTGAACCCCCACCCTTTGCTGCTGGGGGGCGCGGTGCTGCAGAGGGAGCTGCAGAGACGGGAGGCAGAGACGGTGGCGGAGCAGATCCTGAGGGAGGTGCTGCAGGGGGTGCGGACGCCAGAGAGGCCAGGCTCCCCCCCCGAGCTGTACGTCACAGAGGAGCAGAGCTTCTGCCAGCAGAACCCACAGCTGCAGTATGACCACATGGTGGTGCAGAGCTTGAACCGGCTGTGGGAGGAGTGTGtagggtcagaggtcactgaGCCCTGGGACCTGTCCATACCCCACTTCAGAGAGGCCATGCTGGCGATGACTGACGACGAGGAGGGGGTCCGGCGGGAGGCGGCGCTTGGGCAGCTCAATGCCCTGGTCCTGCAGCTgctgCAGCTGTGGCGCGAGGTGCTGGACGGGCTGGTCAGTCAGGCCGCGCTGTTAAGGCAGGTGTTGGGGCTGCCAGAGAGGGACGCCTGGGGGGAGCAACTGCAGGAGGAGGCATGTGAGTCTGGAGCCGCCCCACCACACAATGCACAATGCTACTCACTGCACCACAGGGCCCCGCTGctacacaacaccaagcacagcacacagcacacagcacagcaggacAGAGCTGAGCTCCTCTGGGACAGGGTGCCCTCAGTGGAGTCCGGCCGAGCGGGGAAAGCCAAGAGGGAGGACAAGGTGGACAGGAGAGGAGCGCTGTCCAAGGATGAAAAGAAAGGAGGGATTGGGAAGGacaaggaggagaagaaaggagCTGGGAAGCAGCCAGGCAAGGACAGGCCGGAGGATCGGCCCCCCAGTAAGAAGGGGAGGGTCCAAGAGGAGAAGAGGGTGGGGAAGCCTGCGGCCGGGCCAGCAAAGGAGCTGGTGTCGTCAGCAGAGAGCCTGGAGAGCGAACTGCCCGAGATACACGAGCCACTGGACCCAGTGCTGCTGGACCGGTACCGCCAACAGCTGCATGCCCAGAGGCCCCAGCAGGGCAGCTCCCATTGCCACCATGGCGGCTCTGTCCCAAGCAGCCTGACGCACGCCGGTCACTCGTACAGCCAGTCGGCATGCGATATCGAGGGataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55246 lncRNA downstream 18350 30730378 ~ 30731433 (-) False AMCG00013425
TU55183 lncRNA downstream 150732 30553781 ~ 30599051 (-) True G44259
TU55180 lncRNA downstream 187092 30540668 ~ 30562691 (-) False G44256
TU55184 lncRNA downstream 192535 30554754 ~ 30557248 (-) False G44259
TU55192 lncRNA downstream 197733 30551389 ~ 30552050 (-) True G44264
TU55270 lncRNA upstream 12483 30772542 ~ 30774110 (-) True G44330
TU55331 lncRNA upstream 165427 30925486 ~ 30931267 (-) True G44381
TU55332 lncRNA upstream 171701 30931760 ~ 30935200 (-) True G44382
TU55334 lncRNA upstream 177566 30937625 ~ 30937857 (-) True G44384
TU55378 lncRNA upstream 286666 31046725 ~ 31047119 (-) True G44420
AMCG00013425 mRNA downstream 7140 30730287 ~ 30742643 (-) True AMCG00013425
AMCG00013426 mRNA downstream 26253 30711509 ~ 30723530 (-) True AMCG00013426
AMCG00013427 mRNA downstream 44770 30702766 ~ 30705013 (-) True AMCG00013427
AMCG00013432 mRNA downstream 49118 30698240 ~ 30700665 (-) True AMCG00013432
AMCG00013430 mRNA downstream 52080 30693075 ~ 30697703 (-) True AMCG00013430
AMCG00013431 mRNA upstream 544 30760603 ~ 30761570 (-) True AMCG00013431
AMCG00013429 mRNA upstream 14223 30774282 ~ 30778472 (-) True AMCG00013429
AMCG00013434 mRNA upstream 31395 30791454 ~ 30801211 (-) True AMCG00013434
AMCG00013436 mRNA upstream 43484 30803543 ~ 30808546 (-) True AMCG00013436
AMCG00013433 mRNA upstream 56550 30816609 ~ 30820190 (-) True AMCG00013433
TU55168 other downstream 263452 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 263452 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 263452 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 263452 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 271589 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1805701 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1862122 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2918165 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2932785 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6199118 36959177 ~ 36959914 (-) True G45468

Expression Profile