RNA id: AMCG00013434


Basic Information

Item Value
RNA id AMCG00013434
length 1635
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00013434
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30791454 ~ 30801211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGCGTCAGCTGGCCGGGAGGCGGTGTGTGCGCGCAGGGCAGCCGCGGAGCGCAGTGGAGACTCGGCGGCTCACGGAGCAACATGTAGCGCCGGGCGGGACGAGCTCTGACTTACTGCGCCGGGATTTGTGTTTTCTGGACAGAGAAGAGCCCGAGCAGCGCGTCGCCATGCGGCCCGAGCGCACCCCGTACCTGCTgccgccgctgctgctgctgctgctccggGCGGCCGCCTCGCAGTACTCCAGCGACCAGTGCAGCTGGAGGGGCAGcGGGCTGACGCACGAGGCGCACGCACGGGACGTGGAGCAGGTTTATCTGCGCTGCTCGCAGGGGGCGCTGGAGTGGCTGTACCCAACGGGGGCGCTGATCGTCAACCTGCGGCCCAACATCCTGTCCCCTGCTGCCCAGCGCCTGGCGGTCTGCATCAAGCCGTCCGGCGAGTCCCGCGGCGCCAACATCTACCTGGAGAAAGCGGGGCGACTGCAGCTGCTGTTGCGAGAGGAGGAGCAGCCAGCGGGGCAGGTGCACTGCTTCGGCATAGAGGAGGGCAGCCTGTTCATCGAGGCCACGCCCCGGCAGGACATCAGCCGCAAGATCACCGCATTTCAGTACGAGCTGGTCAACCACCGTCCTGGCGCCGACCCCAGCACTGCTCCCTGCCAGCCCTGCAGTGACTCGGAGGTGCTCCTGGCGGTTTGCTCGAGTGATTTTGtgGCGCGGGGCAGCATTGTGGGCGTGCAGGACGAGGCGGAGCAGCACGAGTCGGTGATCTCAGTGTCGCTCAGCCGCCTCATCCGGCAGAAGAGCCGTGTGTTCGTGCCGGCAGGAGGGCGGGCACCACATTGGCGGGGGCAGATGCGCACACCTCTGGAGTGTGGCGTGAAGCCAGGTGACGGGGACTTCCTGTTCACCGGGGCAGTGCGCTTCGGCGAGGCGTGGCTGGGGTGCGCGCCGCGATTCAAGGACTTCCTGCGGCTGTACGGCGAGGCGCTGGACCGAGGCACCAACCCCTGCCACATCGACACCGCCTGACCCGCACGGCGCCCCCCAATCAGCACTTTCCCCTCAGGCTCGGCCGGGGCCCCAGGCCAGGGCTTGGATggacggacggacagacagagagtCTCCTCACAGCCCGACGCACGCGGCCCTGCCCGGCCCACCCCCAGCCAGCGATGGAGGTACCAGCTCTCGTGGTTGCCAAGCAACACCACTGGACCGAGACTGCTTTTACAGCCACCTTTTCTTTTGGAGACGAAATTCTTAAAACGTCTTAAAAATCCTGAAAGTCCTCCTGCTGCGGAGCGACGTCTCGAAGGCAGCGGACCATGGCGGTGGCCGGCAGCGCTCCTGTAAATCGCAGTGAATGTGAAAGACATGACAAAGTGCTTTGTAAAAAGCTTGATGTACAGTTTGAAGTTGTTTCTTATGACAGAAATGTATGAAGCTAAACCTGCTCTGTTGCTGTATTGTTATGAATTGTGCAATTTCAGCCTGGGATTTTTCAGGCTGATAAATTGTAAAGACTTTAATTCCAGAGAATAAAGACTTCCTGGAGGAAACAAACAGCTCATCTCTCCCCagtgtctccctctccctctccatctgtATTGTTTCACCTCGTTTCCCG

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55270 lncRNA downstream 17344 30772542 ~ 30774110 (-) True G44330
TU55246 lncRNA downstream 60021 30730378 ~ 30731433 (-) False AMCG00013425
TU55183 lncRNA downstream 192403 30553781 ~ 30599051 (-) True G44259
TU55184 lncRNA downstream 234206 30554754 ~ 30557248 (-) False G44259
TU55192 lncRNA downstream 239404 30551389 ~ 30552050 (-) True G44264
TU55331 lncRNA upstream 124275 30925486 ~ 30931267 (-) True G44381
TU55332 lncRNA upstream 130549 30931760 ~ 30935200 (-) True G44382
TU55334 lncRNA upstream 136414 30937625 ~ 30937857 (-) True G44384
TU55378 lncRNA upstream 245514 31046725 ~ 31047119 (-) True G44420
TU55438 lncRNA upstream 502318 31303529 ~ 31310495 (-) True G44469
AMCG00013429 mRNA downstream 12982 30774282 ~ 30778472 (-) True AMCG00013429
AMCG00013431 mRNA downstream 29884 30760603 ~ 30761570 (-) True AMCG00013431
AMCG00013428 mRNA downstream 31395 30749783 ~ 30760059 (-) True AMCG00013428
AMCG00013425 mRNA downstream 48811 30730287 ~ 30742643 (-) True AMCG00013425
AMCG00013426 mRNA downstream 67924 30711509 ~ 30723530 (-) True AMCG00013426
AMCG00013436 mRNA upstream 2332 30803543 ~ 30808546 (-) True AMCG00013436
AMCG00013433 mRNA upstream 15398 30816609 ~ 30820190 (-) True AMCG00013433
AMCG00013435 mRNA upstream 48910 30850121 ~ 30856115 (-) True AMCG00013435
AMCG00013444 mRNA upstream 70691 30871902 ~ 30888190 (-) True AMCG00013444
AMCG00013441 mRNA upstream 95525 30896736 ~ 30905263 (-) True AMCG00013441
TU55168 other downstream 305123 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 305123 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 305123 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 305123 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 313260 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1764549 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1820970 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2877013 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2891633 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6157966 36959177 ~ 36959914 (-) True G45468

Expression Profile