RNA id: AMCG00013436


Basic Information

Item Value
RNA id AMCG00013436
length 744
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00013436
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30803543 ~ 30808546 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGGAGGGGCGCAAGCTCTACCGATCTCTGAGCCCGGCCTGCCGCAGCAaggtgagggggtggggggtgctacAGGGGCTGGGAGGGCGCAGTGACCTCACAGTGATGGAGCAGACCAGCCGCGGTGGTCCTTGGTGTCCTGCCTCAACagcatgtatttattctgaCTTTAAGGTCGTGGCGTTCTGCGACATCGATGAGAAGAAAATCGAGAAAGGCTACTATACCTACGAGGACTCGGAGCAGAGGCCCAAGCCGCGGATTCCAGTCAGGCATTTCAGAGACGCCTCTCCGCCATTTATCATCTGTGTGAAGCTGgaTATGACAGGTGGAGATCTGGAGGAGAACCTGCACTCCCTCAACCTGAAGGAAGGGCTGGACTACTTTCACTTCAACTGAAGAACGAGAACTGGAACCGAAGGAGCTGAAAGtgagagagcgaaagagagagggaCTTGGCACAGCAACAGGAATAACAAGACACACTCTGTTGCCAGGAGAAGCTGTTCCTCTCCTGAGAGGCGGTcagacacacagcaacacacagccTGGTCGTCACTGAGACTGGGTGCTGCTGAGAGACAAAACACTGCACCACACACCACAccgcactgcacacacactgcactgcacacactgcactgcacacaccgcactgcacacacactgtaccacacacCACAccgcactgcacacacactgtaccacactgcactgcacacgcACCACACcgcactgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55270 lncRNA downstream 29433 30772542 ~ 30774110 (-) True G44330
TU55246 lncRNA downstream 72110 30730378 ~ 30731433 (-) False AMCG00013425
TU55183 lncRNA downstream 204492 30553781 ~ 30599051 (-) True G44259
TU55184 lncRNA downstream 246295 30554754 ~ 30557248 (-) False G44259
TU55192 lncRNA downstream 251493 30551389 ~ 30552050 (-) True G44264
TU55331 lncRNA upstream 116940 30925486 ~ 30931267 (-) True G44381
TU55332 lncRNA upstream 123214 30931760 ~ 30935200 (-) True G44382
TU55334 lncRNA upstream 129079 30937625 ~ 30937857 (-) True G44384
TU55378 lncRNA upstream 238179 31046725 ~ 31047119 (-) True G44420
TU55438 lncRNA upstream 494983 31303529 ~ 31310495 (-) True G44469
AMCG00013434 mRNA downstream 2332 30791454 ~ 30801211 (-) True AMCG00013434
AMCG00013429 mRNA downstream 25071 30774282 ~ 30778472 (-) True AMCG00013429
AMCG00013431 mRNA downstream 41973 30760603 ~ 30761570 (-) True AMCG00013431
AMCG00013428 mRNA downstream 43484 30749783 ~ 30760059 (-) True AMCG00013428
AMCG00013425 mRNA downstream 60900 30730287 ~ 30742643 (-) True AMCG00013425
AMCG00013433 mRNA upstream 8063 30816609 ~ 30820190 (-) True AMCG00013433
AMCG00013435 mRNA upstream 41575 30850121 ~ 30856115 (-) True AMCG00013435
AMCG00013444 mRNA upstream 63356 30871902 ~ 30888190 (-) True AMCG00013444
AMCG00013441 mRNA upstream 88190 30896736 ~ 30905263 (-) True AMCG00013441
AMCG00013443 mRNA upstream 102398 30910944 ~ 30912812 (-) True AMCG00013443
TU55168 other downstream 317212 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 317212 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 317212 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 317212 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 325349 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1757214 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1813635 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2869678 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2884298 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6150631 36959177 ~ 36959914 (-) True G45468

Expression Profile