RNA id: AMCG00013438


Basic Information

Item Value
RNA id AMCG00013438
length 1938
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00013438
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30893432 ~ 30895656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCCACCCGAAAGAGCGCAAACCGAAGAAACCTCACTATATCCCTCGGCCTCCAGGCAAACCCTTTAAGTACCAGTGCTTCCAGTGCCCATTCACCTGCAACGAGAAGTCTCACTTATTCAACCACATGAAGTACAACTTGTGCAAGAACTCCATCACGCTGGTGTCTGAGCAGGACCGCACTGGGAAGCCCGTGAGGCCGCCAGCCCCTGACACGGCCCCCAGGGTCACGGCCGAGCCCGCCGAGAGACCCACCGCCTGCCCCACCACAGACAGCCTGCCCCCTGAGACTAATGCTCCAGCTGAGCCGCAGCTCACAGAggaggggcaggaggaggaggcctTGCAGAGCCGAAGACCGAGGGGATCTCGCAGCCCTAAGGTGTCCCTACAGAAAGAcaccagcccagcccagccccctGAGCCCATCGCGAGGCCGTCTGCCTTCGTGCCCATCGCGGCCAGCTGGCAGCCGGACAGAGACACGGCACTCAAACCAGAGGGCATGGCTCTGTCTGGCCCATTCAAGCCTACCCATTACCATCCCAATGCCCCATGGAGACCTGCCCCCGCATTCGTCCAGCCAGACCCCGCCAGCAAGACAGTTGGCCCCAACTACCCTCCTCCATTGATACCTGAATACCCCCCATATATGTTGACTGAGCACCCCATGCCCACTATATACCAGCATTACCTCCTGCCCGGCCATCCCCACGAGCACGAGGGCAGCCACTTCTCGTCGTACTTCATAGACACCCAGAGGTCCATGCTGCCCCACGTGTTCCCAGCTTCACCCATCCCACTGCCGAGCACTCTCCCCTCTGCCATAGACCACCACTACCGATTCTACCAGTCTGTCCACCCAGCGGCATCATTCCATTATGGCATGTACCGCCCCCCACAAGATCACACGTTTCAGGACTTCAGCGCAAAGCCAGGGATCCCTCTGAATGAGTACAGCAGAGATGTGGGCACAGCGGAGTATAGCCATTGCCGCCCAACACGGAGCCCAGCCGCCACTGCCTCGCACGGTAAACCGGGCAAGGACTACCCACGGCCGGCGGGCAGCACAGGCACAGCCAGCCAGGAGGATAGGGGGGAGACTGGGATGAAGATGAGCCCTAGGGCTGGGTGTGCTGCATCTGGCTCCCCTGACCGACCCAGCCCTACGGCTTTCTCGCAGAAAGACCCAGGCGCAGACAGCCACCATGGCCCCCCAGAGGCGAGGGATACAGGCAGAGCCCCCGGCATCCAACCTGCAGACAACTCCCCCGCCAACCCAGTGACTCCCTCTCACACTGCAGAGCAGCAAGACAGGGGACAACTGGCTGAGAGCTCAGGGGACAGCGGCGCAGAGGTGTGTGAGACACCGGCGGGAGGCTGCAGCCCAAGGGAGACATCAGAGACGGAGGACGAAGACTTGGCTCCTCTGGACCTGTCCACCAGGGACCAGGCTGAGGAGGACGAGAAAGCTCTGCCCCTCCCGGCTAGCAGGGGGAATTCTGTGGATACCAGTGTCACGCCGGACCAGGACATGCCTCTGAACCTCTCCTTGAGGGTGTCCCCCAGCCCAGGGGCCTGCTCCCTCCACGTCTCCCGGCATAGCCCAACTCCGGCGTCGGGACCCGGGGGTGCAGGGCAGGAGTTCCCCCGGCCGGCCCCGGAGCTGCGCAGCCTGGAGCCCTGTGACGAGCAGAAGCAGACAGCTGCCTTTGCACTGTGCCAGTTGGCCAGCTCTCGTTCCCGCAGCCCCACAAATGGGACCCCCACACCGGTCACAGGggccacagacacacaaactgcGGTGCACAGCTCCCCAAGCAAGGGCCAGAAGAGGGCGAGTTGTGCCGAGCCCCGCCAGCTCCCACAGACCACCAAAAGAGCCAAGAGTACAGAGACCAGACGAGCACTGAGGAGGAGGCTGCGCTGCTCGTGA

Function

GO: NA

KEGG:

id description
K24377 ZNF750; zinc finger protein 750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55259 lncRNA upstream 118884 30774182 ~ 30774548 (+) True G44323
TU55258 lncRNA upstream 119364 30772381 ~ 30774068 (+) True G44322
TU55242 lncRNA upstream 155945 30736809 ~ 30737487 (+) True G44307
TU55241 lncRNA upstream 158637 30734536 ~ 30734795 (+) True G44306
TU55089 lncRNA upstream 435761 30455672 ~ 30457671 (+) True G44182
TU55328 lncRNA downstream 27090 30922746 ~ 30934437 (+) True G44379
TU55329 lncRNA downstream 29080 30924736 ~ 30926480 (+) True G44380
TU55333 lncRNA downstream 40184 30935840 ~ 30936171 (+) True G44383
TU55343 lncRNA downstream 71253 30966909 ~ 30970500 (+) True G44388
TU55394 lncRNA downstream 203694 31099350 ~ 31106308 (+) True G44433
AMCG00013437 mRNA upstream 21693 30859724 ~ 30871739 (+) True AMCG00013437
AMCG00013422 mRNA upstream 121059 30770263 ~ 30772373 (+) True AMCG00013422
AMCG00013423 mRNA upstream 164197 30727085 ~ 30729235 (+) True AMCG00013423
AMCG00013424 mRNA upstream 182353 30707785 ~ 30711079 (+) True AMCG00013424
AMCG00013417 mRNA upstream 326882 30563240 ~ 30566550 (+) False AMCG00013417
AMCG00013439 mRNA downstream 11190 30906846 ~ 30907997 (+) True AMCG00013439
AMCG00013440 mRNA downstream 44424 30940080 ~ 30949350 (+) True AMCG00013440
AMCG00013446 mRNA downstream 89816 30985472 ~ 31044736 (+) True AMCG00013446
AMCG00013447 mRNA downstream 211986 31107642 ~ 31131214 (+) True AMCG00013447
AMCG00013451 mRNA downstream 253517 31149173 ~ 31150309 (+) True AMCG00013451
TU55261 other upstream 116263 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 325213 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 397776 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 671223 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 964735 29921067 ~ 29928697 (+) False AMCG00013375
TU55551 other downstream 1009312 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1377612 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1527620 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 1527620 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 2210636 33106292 ~ 33106595 (+) True G44870

Expression Profile