RNA id: AMCG00013442


Basic Information

Item Value
RNA id AMCG00013442
length 2421
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00013442
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30914722 ~ 30938171 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAAAAACCTGCGCTGCCTGGCCAAACAACCACCCAGCCCTGCTATTCAAAACAGGTTTGaggGTACGATCAGCTCTATATACCTGCTTCACAGAGCTCCTGCGTCAGCCTGGCTGGAAGGAAACCAGGTCCCGGGCTATAAGGACCTTTGTTGGAAAGAGGCTCAGTGCGCACAGTGCACAGACAGCGGCTCGCAGGGGACAAGGCACCTCACTGATCCATCACATCTGAGCTCCAAGAACGGGAATACTaccGTACTCCAGCATTTCATCATCCAGTCCGTGTTGCCAGCGGAGAAGTGAGGGGAGAAGGTTTCTGCTGGAGCTGATAGCGAGTGTGCTTCCTTCTCTCCCACTGAAGACTTTCCtgggagaaagagacagagagaaggaggaggtggGGACGTGAAAACCTAGGGCAGACCAGAAATTAGGCTCATGGCATCCACTGGTCTTCAGCTGCTGGGCCTGTGTTTGTCTCTGCTGGGCTGGCTGGGCGGGGCGCTGGTCTGCGTGGCCCCGATGTGGAAAGTCACCGCCTTCATTGGCAACAACATTGTGACGGCTCAGACCATCTGGGAGGGGCTCTGGATGAACTGCATCGTCCAAAGTACCGGGCAGATCCAATGTAAGGTGTATGACTCCATGCTGGCACTGCCACGAGACCTGCAAGCCGCCCGCGCTCTGTCCGTggtgtctgtgctgctgtgtggcGTGGCGCTGGCGCTGGGTGTCGTCGGGGTGAAGTGCACCAAGTGCGTGGGGCAGCAGAGCGTGAAGATGCAGATCAGCCAGGTTGCGGGGGCCCTGTTCTCCTTCGCCGGGCTGCTCTACCTCATCCCCGTCTGCTGGACTGCGCACTCGATCATCAGTGACTTCTACAACCCGGCAGTGGCTGCGCCGCTGAAGAGAGAGCTCGGTCCGGCACTTTACCTGGGCTGGGGGGCGTCTGGGTTGTTAATGCTGGGGGGTGGAATGCTGTGTGCTGGATCCAACACCCCTGCAGCCCCATCCTCACCCAACTACAGTGGCAGCAGCAGGCAAAGCAGCCCCCGGAGTGCCCCCACCCTGTCTGCAGGTCCAGTGAAGGGCTACGTCTGAGTCTCCCAGCGGACTGTTTCTCTCTTAACATTCATCAACTGCCAGTTATAGTCTTCACCCCTTGTACCCACCCAGCCTGGAAACTGCCTGTGATTCAAACTGCAGACTGACGACTGGCAACCCAATCCAAAATGATTCCTGTCTTATTActactatgattattattaatattattattattgaaaacatGATAATCAAAATCTTTTGCCACCTCAGCAATCATAACTCTACTCATGTGTGCCTGTTGCTGTAATTCATTCACTGTGTATCTGTCTgcatacagaaacaataaagTGTGATTCTCTTAGCTTTTGTGGGTCCACTAACAGCACTAAACCAACCCAGTGTGTCTTATTTAAGCATAACACTGTCTAAACTTAATCTGAACATGTTTATCTCATGTCTGTCTATACacaggtcagtgtgtgtgcccAGTGGTGATCATAATAAGGGAATGAGTGGAAACTAAAGAGGAGTGTGTTTTGCTGGTGCACTGAAAATGTTCTCTTGATATGCATGTGAATAATATACAGGATACACCAGTGGTTTCCAAAGGTTTTCACACGTCCCTGCTATTTGTGGTATTCAAATGATCACTGACCACCTGAATATGAATCATACAGcctttaaatacacacatacacatacaaggGACTGAAAAGTAATTACCAATAAAAATTCAACACTGATACAGGACACTTCATATTTTTAAGGATTTCTAAAATTTTGATTTGAGACAGATGTGATCGTGTGCAGGACGAAATATGCAACAGACCATtttttgggaaccactggttatgattaaaatatatataatgcaatagACAGCTGTGTGTTATAGGGTTTTGGCTTGGCTTTAATATCCACGTCATTCCTTTGGATAGACTCGAATGCCATTTTAGTGAAATTAGTGTGGTGTCTTCCTGACTTATCCATCTGGTTTATCCCAGAGGTGCTCTACGGGCTTTAGGGCAGGATGAGGAAACCATTACATCTTTCTAAATCTGTTCGCCACGAAGTACTGTTTAATACTCCGAGCTTCAAGATAgggtgttttatgttttcaagaACACTCCTGTCTGAAATTTCACAATATTCACTGCCCTTCAGAAATTACACACAGTGTGATCTCAGGTTCAATTAATCCCCAGCAGGGGAAGGCTTGTCCCAATACTTTTATGATAGTTTACACTTAAAATAACCCCAGGTTCAAGTATTTTCGTTTTGTTAATGCATGTCCATGAACtcttatatttgtatgtgtatttatttatgtgtttgttacaattttcacaaacaataaaagaataaatataa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55270 lncRNA downstream 140612 30772542 ~ 30774110 (-) True G44330
TU55246 lncRNA downstream 183289 30730378 ~ 30731433 (-) False AMCG00013425
TU55183 lncRNA downstream 315671 30553781 ~ 30599051 (-) True G44259
TU55184 lncRNA downstream 357474 30554754 ~ 30557248 (-) False G44259
TU55192 lncRNA downstream 362672 30551389 ~ 30552050 (-) True G44264
TU55378 lncRNA upstream 108554 31046725 ~ 31047119 (-) True G44420
TU55438 lncRNA upstream 365358 31303529 ~ 31310495 (-) True G44469
TU55457 lncRNA upstream 431010 31369181 ~ 31371002 (-) True G44487
TU55479 lncRNA upstream 515880 31454051 ~ 31492508 (-) False G44507
TU55480 lncRNA upstream 523655 31461826 ~ 31492508 (-) True G44507
AMCG00013443 mRNA downstream 1910 30910944 ~ 30912812 (-) True AMCG00013443
AMCG00013441 mRNA downstream 9459 30896736 ~ 30905263 (-) True AMCG00013441
AMCG00013444 mRNA downstream 26532 30871902 ~ 30888190 (-) True AMCG00013444
AMCG00013435 mRNA downstream 58607 30850121 ~ 30856115 (-) True AMCG00013435
AMCG00013433 mRNA downstream 94532 30816609 ~ 30820190 (-) True AMCG00013433
AMCG00013445 mRNA upstream 20018 30958189 ~ 30976781 (-) True AMCG00013445
AMCG00013449 mRNA upstream 115642 31053813 ~ 31068895 (-) True AMCG00013449
AMCG00013448 mRNA upstream 143481 31081652 ~ 31082490 (-) True AMCG00013448
AMCG00013450 mRNA upstream 157826 31095997 ~ 31096392 (-) True AMCG00013450
AMCG00013456 mRNA upstream 264142 31202313 ~ 31203338 (-) True AMCG00013456
TU55168 other downstream 428391 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 428391 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 428391 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 428391 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 436528 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1627589 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1684010 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2740053 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2754673 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6021006 36959177 ~ 36959914 (-) True G45468

Expression Profile