RNA id: AMCG00013450


Basic Information

Item Value
RNA id AMCG00013450
length 396
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00013450
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31095997 ~ 31096392 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTTCATTGCAGTCCTGGTTTTGTGCGCTTTTTACTTTGCTGGTCTGCAGGCTCAGTGCCCTGACCCAGCACTCCTAAAAGACAACAATGGCACTAAGCTTTGTGCCCGTCTGTTCGAGGACAGCCATTACTACAACGAGCAGAGCTGTGGGGGGAAGTCCCTGGACGTCTACAAAGGCGACGACTGTCCAATCATGCCTGTGTGGTGGAACAACAGGGTCTCCTCGCTTGTCGTGTCCAAGTTCTGCAGCCTTACTGTCTGGTCCCGGACCAAGAAGGAAGGCAAGAGGCGCAAGTTCTCTGCCGGAGTCGTCCACCGCCTGAAGGACGTTGGGCAGGGCCTATTCAGCAATTGGAACAACGACATCTCCGGGTACTTCTGCGAGTGTTAA

Function

GO: NA

KEGG:

id description
K19935 SYCN; syncollin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55378 lncRNA downstream 48878 31046725 ~ 31047119 (-) True G44420
TU55334 lncRNA downstream 158140 30937625 ~ 30937857 (-) True G44384
TU55332 lncRNA downstream 160797 30931760 ~ 30935200 (-) True G44382
TU55331 lncRNA downstream 164730 30925486 ~ 30931267 (-) True G44381
TU55270 lncRNA downstream 321887 30772542 ~ 30774110 (-) True G44330
TU55438 lncRNA upstream 207137 31303529 ~ 31310495 (-) True G44469
TU55457 lncRNA upstream 272789 31369181 ~ 31371002 (-) True G44487
TU55479 lncRNA upstream 357659 31454051 ~ 31492508 (-) False G44507
TU55480 lncRNA upstream 365434 31461826 ~ 31492508 (-) True G44507
TU55492 lncRNA upstream 409776 31506168 ~ 31506718 (-) True G44519
AMCG00013448 mRNA downstream 13507 31081652 ~ 31082490 (-) True AMCG00013448
AMCG00013449 mRNA downstream 27102 31053813 ~ 31068895 (-) True AMCG00013449
AMCG00013445 mRNA downstream 119216 30958189 ~ 30976781 (-) True AMCG00013445
AMCG00013442 mRNA downstream 157826 30914722 ~ 30938171 (-) True AMCG00013442
AMCG00013443 mRNA downstream 183185 30910944 ~ 30912812 (-) True AMCG00013443
AMCG00013456 mRNA upstream 105921 31202313 ~ 31203338 (-) True AMCG00013456
AMCG00013453 mRNA upstream 138761 31235153 ~ 31262580 (-) True AMCG00013453
AMCG00013457 mRNA upstream 198066 31294458 ~ 31297411 (-) True AMCG00013457
AMCG00013454 mRNA upstream 215746 31312138 ~ 31353624 (-) True AMCG00013454
AMCG00013452 mRNA upstream 275608 31372000 ~ 31388043 (-) True AMCG00013452
TU55168 other downstream 609666 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 609666 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 609666 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 609666 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 617803 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1469368 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1525789 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2581832 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2596452 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 5862785 36959177 ~ 36959914 (-) True G45468

Expression Profile