RNA id: AMCG00013452


Basic Information

Item Value
RNA id AMCG00013452
length 3504
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00013452
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31372000 ~ 31388043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGACTGCATGTGCGAAGCGGCTGCGGGTCTCACACTTACTTCACACGCTCTGACAAGCAGACGGGTTGCGGGACCACCATTagtgttatttcatttttttaataatatttatttgttgtactAAGTCATAATGGCGGAACAGCACGAAGCGAAGGGGACCTCTAACGGAGAAGCACATATGGACGTCGGGGAAGCCGGCGACTCTACGGTTGCGAACGGCCTGATCGGGCACGGAAAAGAGGGCGCTGCGGAGACCATGAAGCAGCGAGTGAAGAGGATAGTAAGAGCCAACCTGCTGGTGATCCTCACCGTGGCGGGGGTCATCCTCGGGGTGCTCATGGGACTCGGGGTGCGGAGCGCAGGACTGAGCCGCGTTCAGGTCATTTATTTCGGCTTCCCCGGGGAGCTGCTGATTCGGCTGCTGAAAATGATCATCATACCCCTGGTCGTCTGCAGCCTGGTTTCAGGAGCCGCCAGTCTCGACCCCAAAGCCCTTGGCAAGTTAGGCGGCTGGGCAATGCTGTTTTTTCTTGTCACCACATTAATTGCCTCTGCTATCGGGGTGTCGATGGCCTTTATCATCCGACCCGGGGAAGGTACCGGTGCCAAACCCAGCGTGCTCGGACTAGACAGTGGGCTGCCGGAGCCGAAAGAAGTGGTGGATTCATTCCTGGATCTTATCAGGAATATATTCCCCTCCAACTTGGTGTCAGCAGCTTTCCAATCATACGCCACAAGCTACAAGTCGATAAATATAACGCAGAACATAACCAATGAGTCTGGGGCTATCGAAACCATGTACATTATAGAGAAGGTGCCCTTTGGTGTGGATGCAGATGGCATGAACATTCTGGGCCTCGTGGTGTTTGCTATTGTGTTTGGAGTGGCACTGAGGAAGCTGGGAGAGGAGGGTGAGATCCTCATCAAATTCTTCAACTCCTTCAATGAGGCCACCATGGTACTGGTGTCCTGGATCATGTGGTATGCCCCTTTTGGTATCATGTTCCTGGTAGCGGCAAAAATCGTGGAGATGGAGGATGTGGCAACGCTTTTTGCCAGCCTGGGAAAGTACATCTTATGCTGTGTGCTGGGCCACGTGGTGCATGGCCTGATAGTTTTGCCCCTCATATACTTCGCAATCACCCGCAAGAACCCAATGACCTTCCTGTGGGGCATCTGCACTGCCCTGGCCACCGCCTTTGGGACCTCCTCCAGCTCAGCTACCCTGCCACTGATGATGAAGTGTGTGGAGGAGAAGAATGGAGTATCCAAACACATCAGCCGCTTCATCCTGCCCATCGGGGCCACAGTCAACATGGACGGGGCAGCGCTCTTTCAGTGTGTGGCAGCCGTCTTCATAGCCCAACTCAATGACTATCCCCTCAACTTCATCCAGGTTATCACTATCCTGGTGACGGCCACAGCGTCCAGTGTGGGTGCTGCAGGGATCCCGGCGGGGGGTGTCCTGACTCTCGCCATCATCTTGGAGGCCGTGGGGCTGCCCACCAATGACATCTCCCTTATTCTGGCGGTGGATTGGCTGGTGGACCGGACCTGCACCGTCATCAATGTGGAAGGCGATGCCTTTGGGGCAGGGCTCCTGCAGCACTTTGTGGATCGGAGTGCTGGCAACAGTACAGAGGCAGAGCTGACTGAAGTCAAACTAGAGAATGTCCTGCCTAGAGAGGAGGATATGCCCCTGATCAAGAAACCAAGTACAGAGCTGGCAGAGGGCATGGCCTCTGGGGCGTGCGAGAAAGAGTCCGTTATGTAAACAGGCCTGCTTCTCACTAATGGTCTTAGCAGACAGTGCTCAAGCAATTACAAATGGCAACTACATTACCAAAAATGAGAGAGGAAGGAAATCTGCAAACAGATGTGTTCTATTTTTGTTAAGCATGTAttgtttcaaatacaaaaaccGTTTTTACCATAAATTATTCTTTCAAAACCACAACTGCATTGCAAACCTGTCTCTCTCACCCACCTCAGACCAACGCCTTGCAGGGTTTCCCACAGCTTTATTTAGGCCAAAATTAAGTTCGGTAGCAACCCCTTCCTCCCCCCGCTTCCTGGTTGACGATTCGTCGTCAACCCTAACCACCACCATCCCCCCGGCGTGCCTGTGCAAATTTCTGTGGGAAACCCTGCATTGTGTATGGCAACCTCGTTTGATACATTGGTATagctttgatattttaattttctcagcTCCAAAACACCTTGTACCTTCTGAAAATAACCTCCTACCAAGCAACTACTCCAAACTATTGTTTCTTGCTTAATGGATGTTATGTGGGTTCCGCATTTCATTTGTTCAGTTTCAGGCAAAGATGATATGACAGTGTGTATAAGAGCAAGAACACTAATCCttacaaaaatactttctaaGGACCTGAAACATGTTCTCCTGAATTAAGAGTTCTGTAATCGCATTAGAAAATGCTGCAAATTCATTAGGTCCTTTTGGACTGTGCTAGGTTTGGGGCGGAATAAGCATAAATATACCATGTCCATATTGGATGTCCAGTACATGGCAGCCATCTTGAGTGGGGTTGGATTGGGGGAGAGTGTATTGGTATATTTTGTGGAGTATATGGAGTTTATTTTGTGCATTGCAATTTGAGATAACAGGACAAGTGAAGATATTAGGAGCATAGTGCAGAGACACTGTGATGATAGCAGTATTGCTAGATAATTCTCAATGTAGCAGTAGCACACTGGCGAACTATGAAAAATGCTGGTTGGAGCAGTCTGCACATCAAGATAGTTGGTCCTTCACAAGGTCCCTAGTGAATTTGGTATGATGATTGGAGGCTGGGGGGAAATATTTAGGTCACCATGGTTTTTTACTGGTTTCTAATTCCTTGATAGAAGTGTACAGAGTGATAAAACGCAGGAAAGAACATATGAAGGTGAGATCAGTATAGTTTTTAAGTGAACAGTACAGTTTAGAGctgttttgatttgaaaaggatttaaaattaTCAGACTTTTTCAATTAGTATACATGGTAGGGATATAAATAATGAGTATTTCACTGCTGGAATACTCAAAACCCATTACAGACAATACTCCCATATGCTTCACAAACATTGcacacaatcaaaataatttaagtgATGAATATGAAGTTAGACATTAGTCAGGTGTCTCCATTGTACTGGATCTCCAGTAGCCTATATGGAAATTCATAGAAAGCAAGCCCCTTGCTCTTTGTAACAAAGCAATATGGACATTAAGAAGGGACATGTAATGAGTCTTAAAATAACCTGTATTCATGAAGAGATGTTATTTAGTACTTGAAGATTGCTTGAGTAGTTATACTTAGTTGCAACAAATCCTCTAGTATCTGAACCCATATGATCCATACACAGAGATTTCAAATTGTTTGCTGATTGAATGGCATGTTAAAATCCTTCATATAAAGTGTATAACGGCCAATGGTATACActaacctaaaggattattaggaacacctgttcaatttctcattaatgc

Function

GO: NA

KEGG:

id description
K05616 SLC1A5; solute carrier family 1 (neutral amino acid transporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55457 lncRNA downstream 998 31369181 ~ 31371002 (-) True G44487
TU55438 lncRNA downstream 61505 31303529 ~ 31310495 (-) True G44469
TU55378 lncRNA downstream 324881 31046725 ~ 31047119 (-) True G44420
TU55334 lncRNA downstream 434143 30937625 ~ 30937857 (-) True G44384
TU55332 lncRNA downstream 436800 30931760 ~ 30935200 (-) True G44382
TU55479 lncRNA upstream 66008 31454051 ~ 31492508 (-) False G44507
TU55480 lncRNA upstream 73783 31461826 ~ 31492508 (-) True G44507
TU55492 lncRNA upstream 118125 31506168 ~ 31506718 (-) True G44519
TU55501 lncRNA upstream 257548 31645591 ~ 31646024 (-) True G44528
TU55514 lncRNA upstream 351633 31739676 ~ 31739926 (-) True G44538
AMCG00013454 mRNA downstream 18376 31312138 ~ 31353624 (-) True AMCG00013454
AMCG00013457 mRNA downstream 74589 31294458 ~ 31297411 (-) True AMCG00013457
AMCG00013453 mRNA downstream 109420 31235153 ~ 31262580 (-) True AMCG00013453
AMCG00013456 mRNA downstream 168662 31202313 ~ 31203338 (-) True AMCG00013456
AMCG00013450 mRNA downstream 275608 31095997 ~ 31096392 (-) True AMCG00013450
AMCG00013464 mRNA upstream 278673 31666716 ~ 31672371 (-) True AMCG00013464
AMCG00013463 mRNA upstream 300467 31688510 ~ 31695713 (-) True AMCG00013463
AMCG00013467 mRNA upstream 372213 31760256 ~ 31781607 (-) True AMCG00013467
AMCG00013466 mRNA upstream 471077 31859120 ~ 31863334 (-) True AMCG00013466
AMCG00013470 mRNA upstream 482218 31870261 ~ 31891494 (-) True AMCG00013470
TU55168 other downstream 885669 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 885669 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 885669 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 885669 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 893806 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1177717 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1234138 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2290181 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2304801 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 5571134 36959177 ~ 36959914 (-) True G45468

Expression Profile