RNA id: AMCG00013453


Basic Information

Item Value
RNA id AMCG00013453
length 2421
RNA type mRNA
GC content 0.55
exon number 17
gene id AMCG00013453
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31235153 ~ 31262580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcCCTGAGTGTGGCTTCTATGGGATTTATGACAAGATCCTCTTGTTCAAACATGACACTGGAACCAATAACATCCTGCAACTGGTTAAGAGCGTGTCTGATCTCCAGGAGGGAGATCTCATTGAAGTGGTGCTGTCTGcgGCAGCCACATTCGAGGACTTCCAGATCCGTCCTCATGCCCTCAACGTTCACTCATACCGTGCCCCGGCCTTCTGTGATCACTGCGGAGAGATGCTGTTTGGCCTGGTGCGACAGGGACTGAAGTGTGATGGTTGTGGGCTGAACTACCACAAGCGCTGTGCCTTCAGCATTCCCAATAACTGCACAGGGGCGCGCAAGAGACGACTGTCCACCACCTCTCTGAACAGTGCCCAGTCCCTACGTCTGTCCACCACAGAGTCTGTGTCCTCCAGCACGCCCCTGGATGACAGCTTGACCCGGACTCCCAGTGAGACGTCAGGGACCCCCGCTCGGCGCTTCTACTCGGGACGTCCCATCCAGCTGGACAAGATGCTTTTGTCCAAAGTAAAGGTGCCGCACACCTTCGCTGTCCACTCCTACACCCGGCCCACTGTGTGCCAGTACTGCAAGAGGCTCCTGAGAGGGCTATTCAGACAGGGACTGCAGTGCAAGGACTGCAAGTTCAATTGCCACAAGCGATGTGCTTACAAGGTTCCCAATGACTGTTTGGGGGAGACCATCATTAACGGAGACATTCTCAGCCCCAGCGTGGACACTGAGGTGCCTATGGATTTCTCCAGTGAGTTCGGAGACTCTGACAAATCCTCACTCATGGACGACTCGGATGACTCTGGAATTATCCCTGGATCGCACTCCGAGAACAACTTCCCCGAAGACAGCCATAGCGGGTCAAGTGGGGACCAGAGCTCCATGGGCTACATACCTCTAATGAGAGTGGTGCAGTCAGTGAGACAGACCACACGCAAGTCTAGCACTACCATCAAAGAGGGCTGGATGGTCCACTACAGCAACAAGGACACACTGagGAAACGTCACTATTGGCGTCTAGACTGCAAGTGTATCACCCTCTTCCAGAACGACACCACCAACAAGTATTACAAGGAAATCCCCCTATCGGAGGTCCTGCAGGTCAGACCAGCGGAGGACTTCAGCTTGGTCCCTGCGGGCACCAGCTCCCACTGCTTTGAGATTGTCACAGGAACCATGCGTTACTTTGTGGGGGAAGAGCCTGCCTCTGAACTGAGCTCCTCCAATAGCAGTGCCCCAAACAGTGGGGTGGGCAGGGATGTGGCCAAGGCCTGGGAAAGCGCCATTCGCCAGGCTCTCATGCCCGTCATCTTCCAGGATGCTCCCACGTCACAGGGACACACTCCCCACAGGCAAGCCTCTGTGAATATATCAGTGTCCAACAGTCAGATTCAGGAGAATGTGGACATTGGCACTGTGTACCAGATCTTCGCTGATGAGGTGCTGGGATCTGGGCAGTTTGGTGTCGTCTATGGCGGAAAACACCGGAAGACTGGGAGGGATGTTGCCGTCAAGGTGATTGACAAACTGAGGTTCCCCACCAAGCAGGAGAGCCAACTGAGGAACGAGGTTGCTATACTCCAGAGCCTGCGCCACCTGGGTATTGTGAACCTGGAGTGCATGTTCGAGACACCTGAGAAGGTGTTTGTAGTGATGGAGAAGTTGCACGGGGACATGCTGGAGATGATCCTGTCTAGCGAGAAGGGCCGGCTGCCTGAGCGCCTCACTAAGTTCCTTATCACACAGATCCTGGCTGCTCTGCGCAACCTGCACTTCAAGAACATCGTGCACTGTGACCTGAAACCCGAGAACGTGCTGCTGGCCTCCGCTGAGCCCTTCCCTCAGGTGAAGCTGTGTGATTTTGGCTTTGCTCGGATCATTGGGGAAAAGTCATTCCGACGCTCCGTGGTGGGAACCCCGGCCTATCTGGCCCCAGAGGTGCTACTGAACCAGGGCTACAACCGCTCGCTGGATATGTGGTCTGTGGGTGTCATCATGTACGTCAGCCTGAGCGGCACCTTCCCCTTCAACGAAGATGAGGACATCAACGACCAAATCCACAATGCTGCCTTCATGTACCCTCCCAACCCCTGGAAACACATCTCCCCTGAAGCCATTGACCTGATCAATAACCTGCTACAGGTGAAGATGAGGAAACGCTACAGTGTGGACAAATCACTGAGCCACACATGGCTGCAGgaCTACCAGACATGGCTGGACCTACGGGAGCTGGAGTGTAAGCTGGGCGAGCGATACATCACCCATGAGAGTGATGACAGCCGCTGGCAGCAATTTGCCCAGGACCACACACTGCCTTACCCCCAACACCTCATCGCCCCCCCCCCTGCAGGCAGTGATGACTCCGATGATAGTGATATGCAGGGCCTGACTGAGCGTGTCAGCATCCTCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K06070 PKD; protein kinase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55378 lncRNA downstream 188034 31046725 ~ 31047119 (-) True G44420
TU55334 lncRNA downstream 297296 30937625 ~ 30937857 (-) True G44384
TU55332 lncRNA downstream 299953 30931760 ~ 30935200 (-) True G44382
TU55331 lncRNA downstream 303886 30925486 ~ 30931267 (-) True G44381
TU55270 lncRNA downstream 461043 30772542 ~ 30774110 (-) True G44330
TU55438 lncRNA upstream 40949 31303529 ~ 31310495 (-) True G44469
TU55457 lncRNA upstream 106601 31369181 ~ 31371002 (-) True G44487
TU55479 lncRNA upstream 191471 31454051 ~ 31492508 (-) False G44507
TU55480 lncRNA upstream 199246 31461826 ~ 31492508 (-) True G44507
TU55492 lncRNA upstream 243588 31506168 ~ 31506718 (-) True G44519
AMCG00013456 mRNA downstream 31815 31202313 ~ 31203338 (-) True AMCG00013456
AMCG00013450 mRNA downstream 138761 31095997 ~ 31096392 (-) True AMCG00013450
AMCG00013448 mRNA downstream 152663 31081652 ~ 31082490 (-) True AMCG00013448
AMCG00013449 mRNA downstream 166258 31053813 ~ 31068895 (-) True AMCG00013449
AMCG00013445 mRNA downstream 258372 30958189 ~ 30976781 (-) True AMCG00013445
AMCG00013457 mRNA upstream 31878 31294458 ~ 31297411 (-) True AMCG00013457
AMCG00013454 mRNA upstream 49558 31312138 ~ 31353624 (-) True AMCG00013454
AMCG00013452 mRNA upstream 109420 31372000 ~ 31388043 (-) True AMCG00013452
AMCG00013464 mRNA upstream 404136 31666716 ~ 31672371 (-) True AMCG00013464
AMCG00013463 mRNA upstream 425930 31688510 ~ 31695713 (-) True AMCG00013463
TU55168 other downstream 748822 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 748822 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 748822 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 748822 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 756959 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1303180 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1359601 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2415644 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2430264 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 5696597 36959177 ~ 36959914 (-) True G45468

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000308_01060962_01079388.mRNA True 2468 mRNA 0.52 17 CI01000308 1060879 ~ 1079388 (-)