RNA id: AMCG00013454


Basic Information

Item Value
RNA id AMCG00013454
length 1989
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00013454
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31312138 ~ 31353624 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCGGATCGGTCCGGTGGAAGAGCGGGCGGCACGAACCCGAGCCCGTTGCCGGGCGGGAGCGGCGTGGGACGGAACCCGAACGGGCCCAAAGCGGCGGCGGCGACCGCGGCGGCTCCTGTAGCGGGGGCGATGGCAGTCTCTTCCCAAGCTAGGGAGCTGCAGGAGGGCGAAGCGGGCCTCTCGCTCCCCGGAATTCTGCACTTTATCCAGCACGAATGGGGACGCTTTCAGGCCGAGAAATACCGATGGGAAGCCGAGAGGGACGAACTCAGGGCGCAGGTGGCGTTCCTGCAGAGCGAGAGGAAGGGCCAGGAGAATATGAAGCAAGACCTGGTTCGCCGCATTAAGATGCTGGAATACGCCCTCAAACAGGAGCGGTCGAAGCATCAGAAACTCAAAGCCGGCAATGAACAGAACCCAGGAGAGAAGAAGTCGGAGACTGGAGAGTCTGAGCAAGAGTCTGAATCGGAGCCGTCCAATCAGATGTCTTGGAAGGAGGGGCGTCAGCTGCTACGCAAGTACCTGGAGGAGGTGGGCTATTCGGACACAATCCTGGACATGCGCTCTAAACGGGTCCGCTCCCTACTGGGCCGGAGCAGCCCCGAGGTCAACGGCTCTCCCACCCCTGGGCCCCCACCACAAGACCGGGAAGATCGCGGTGGAGGGGAGAATGCTGGAAAGGAGAGTTCGAAGGAGAGGCTAGGAGGCTCTGTTCTGGAGAAGCTGCCCTTCCTCCATGGgtgtgaagaggaggaggaggacagcgATGAAGAGGATGACTTCCAGGGCATGACCACTGACCTGTTGGGAGCAGAGCCAATGGGCGCTGACCTTGATCCGGAGGATGAGGAGGACGAGGATGACTCTGAGGACGCCCTGAACGAGTTTGACTTCCTGGGCTCCGGGGAGGAGGCCGAGGGAGCTGGTGAGGCAAGGATCTCTGGAGACGGTCGAGAACTGGaGAACCGAAGAAACAAGCTGCAAGGAATCATGTCAGACTACCGTGATGTGGACGGGCTCCCCCCCAAATCGGCCCTCCCCCCCTCAGTGCCAGGCCAGTCCAGGGCCAGCGAAGGCGGTGCACTGGGATTCTCCTCGGATGTCTTCATCCTGGACACGGTGGGGGGTGGAGACATGAACCTCGGGGAGCTGGCTGACCTCACTGTTGCCAACGACAATGACCTCACCATTGATGATAGCCGTGAGGAGTTCAAGAAGACATGGAACCCTCGCTTTACCCTCCGTAGCCACTTTGACGCCATCCGGGGCTTGATGTTTCACCCCAGCCAGGCCGTGCTGCTCAGTGCCTCTGAGGATGGCACACTAAAGCTGTGGAACTTACACAAGGCCATCCACTCCAAGAAtggTGCTGTTCTGTCTCTGGCTATGGGGGACAGTGGTGAGTCCTGCTACAGTGGAGGGCTGGACGGCACTGTTCGCTGCTGGAAGATTCCTGATCTCAACGTGGATCCCTATGATAATTATGATCCTGGGATTGAGAGCAGCGTGCTGGCGGGACACTCGGATGCGGTGTGGGGGCTGGCCTTCTCCGCTGCCCAGACCCGGCTGGCCTCCTGCTCCGCCGATGGGACGGTCCGAATCTGGGACCCCTCACAGCAGAGCTCCGCTTGCCTCAGCGTCTTCAACAAAGAcaaggAGCTTGGGATCCCTACCTCAGTGGCTTTTGTGAACTCAGAGCCCTCCCAGGCCGTGGTGTCTTATAATGGTAAAGTAATTCACTCCATGGTAGCCCACCTTGATGCAGTGACCTGCCTGGCTGCCGACCCCAAAGGCACTTATCTCATCTCAGGCAgtcatgactgctcggtgcgACTCTGGACACTGGACAGCCGGACATGTGTGCAGGAGATCACAGCCCACCGCAAGAAGCATGACGAGGCCATACATGATGTGGCTTTCCACCCCAGCCAACCCTTCATCGCCAGCGGAGGGGCTGATGCGCTGGCTAAAATCTTTGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55438 lncRNA downstream 1643 31303529 ~ 31310495 (-) True G44469
TU55378 lncRNA downstream 265019 31046725 ~ 31047119 (-) True G44420
TU55334 lncRNA downstream 374281 30937625 ~ 30937857 (-) True G44384
TU55332 lncRNA downstream 376938 30931760 ~ 30935200 (-) True G44382
TU55331 lncRNA downstream 380871 30925486 ~ 30931267 (-) True G44381
TU55457 lncRNA upstream 15557 31369181 ~ 31371002 (-) True G44487
TU55479 lncRNA upstream 100427 31454051 ~ 31492508 (-) False G44507
TU55480 lncRNA upstream 108202 31461826 ~ 31492508 (-) True G44507
TU55492 lncRNA upstream 152544 31506168 ~ 31506718 (-) True G44519
TU55501 lncRNA upstream 291967 31645591 ~ 31646024 (-) True G44528
AMCG00013457 mRNA downstream 14727 31294458 ~ 31297411 (-) True AMCG00013457
AMCG00013453 mRNA downstream 49558 31235153 ~ 31262580 (-) True AMCG00013453
AMCG00013456 mRNA downstream 108800 31202313 ~ 31203338 (-) True AMCG00013456
AMCG00013450 mRNA downstream 215746 31095997 ~ 31096392 (-) True AMCG00013450
AMCG00013448 mRNA downstream 229648 31081652 ~ 31082490 (-) True AMCG00013448
AMCG00013452 mRNA upstream 18376 31372000 ~ 31388043 (-) True AMCG00013452
AMCG00013464 mRNA upstream 313092 31666716 ~ 31672371 (-) True AMCG00013464
AMCG00013463 mRNA upstream 334886 31688510 ~ 31695713 (-) True AMCG00013463
AMCG00013467 mRNA upstream 406632 31760256 ~ 31781607 (-) True AMCG00013467
AMCG00013466 mRNA upstream 505496 31859120 ~ 31863334 (-) True AMCG00013466
TU55168 other downstream 825807 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 825807 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 825807 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 825807 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 833944 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1212136 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1268557 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 2324600 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 2339220 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 5605553 36959177 ~ 36959914 (-) True G45468

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016736 False 2396 mRNA 0.55 16 NC_007126.7 11693624 ~ 11757647 (+)
grasscarp (Ctenopharyngodon idella) CI01000308_01110508_01122419.mRNA True 2521 mRNA 0.49 15 CI01000308 1110471 ~ 1122932 (-)