RNA id: AMCG00013455


Basic Information

Item Value
RNA id AMCG00013455
length 1563
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00013455
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31356805 ~ 31358367 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGTGAGTTTCTGCCAGGGTCTTCTGACTGGGGCCATAGCCCTTAACTTGTTGATCCTGTACTATGTATCCCGGGCCCAGCAGCAGATGATGGAGAAGAGACGCGAGCCAGGGAAAAGCTCACCCAAAAAGGCCTCCCTCCCTGTGTCTGGCGTGGGCTTGGGCATGGGGGCCAATGGTAACAGCAGGAGCCCAGGCATCACGGTGATGGTGCGTGAGTTTGAGGACTTTGAGAACTATGTTCCAGAGGTGGCGCACTCCTTCTTAAAGCACAGGCCCGAGATTCCCTTTCTTGTAGTGGCAGACAGCTTGCCCTACCCGCCCATGGCATTGACAGAAGGGGTCCGCTTGGTGGTCCTGAAGCCTGCCCCCGATCAGCCCCCCCAAGCATCCCGGCCTGAATTCTTCATCCAGACCGAGTATATCCTCTTGGTACCAGATGGAGTGGAGCTGGACCTGGGGCGGCAGTTGGACAGGCTGGTGCGAGAGCTGGAAGGAGAAGGTGGGGGGCCTGTGAGGCTGGTGGCTGCACCGGTGCTGTCACGCTCATCTGTCCAGTGCCTGCACCTGAGGGTCAGCCTACGTGAGTGGACAGCCACCTATAGCCCAGCGGCCTCGGGCAGTAGTGGCAGCGTGTGCACAGCCCTGCGGGGTGACGCGGTGCTTCTCATCCGCACTGAGGACCTCTTCAATCTCTCAAGCCCCCTAGCCCGGCCACTTTTCACCTCTCTGTTCATGCAGACCTCCCTGCGTGGCTGGAAAGTCAAGCTGCTAGAGGGGCCGTCCTTTGGGTCCAACCGTAGACCCCTCTTCGGCTCGGCCCATAACCAATGGAAGGCTGACAGCCGTCTACGGGAGTCCACTGTCAAGCTGCTTAGGGAATTTGGGGTCAAACGTATCATCCACCCCGACGGGAAGGATCAGTGGTTTGGCTGCAGCAAGGAGACACCTCGGTGTTTCGGAACTGTCCACGATGACACCCCTGAGTACCTCTACCTGGAGCGTTGGACGCCCCCATGCTGTCTGCGCGCACTAAGGGAGACAGCCAAGTATGTCATCAACATTCTAGAGACCTCTGGGGTCCGCTACTGGCTAGAGGGGGGGACCCTGCTAGGGGCAGCCCGACACCAGGACATCATCCCCTGGGACTACGATGTGGACTTGGGCATCTACCTCGAAGATGTACCCAATTGCGACTACCTGAAGAACCTAGACTCAGGCTCATTAGTAGACGCCAATGGCTACGTCTGGGAGCGGGCAGTTGAAGGGGATTTCTACCGGGTCCAATTCAGCGAGGCCAACCACCTCCATGTAGACCTGTGGCCCTTCTACCCACGCAATGGCATCATGACCAAGGACACCTGGATGGAGCACAAGCAGGACGTGGAGTTCCCGGAGCACTTCTTGCATCCGTTGGTACCTATGCAGTTTGCTGGCATCACTGCTTACGCCCCCAACAACTATCGCAGCTTCCTGGAGCTCAAGTTCGGGGAAGGGGTCATAGAGAACCCCCAGTACCCCAACCCAGCCAAGAAGAGACTGGACCGGAGCCGCCTGTGA

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0001570 vasculogenesis biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060049 regulation of protein glycosylation biological_process

KEGG:

id description
K19873 FKRP; fukutin-related protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55435 lncRNA upstream 46314 31303537 ~ 31310491 (+) True G44468
TU55436 lncRNA upstream 48582 31303537 ~ 31308223 (+) False G44468
TU55394 lncRNA upstream 250497 31099350 ~ 31106308 (+) True G44433
TU55343 lncRNA upstream 386305 30966909 ~ 30970500 (+) True G44388
TU55333 lncRNA upstream 420634 30935840 ~ 30936171 (+) True G44383
TU55456 lncRNA downstream 10840 31369207 ~ 31371002 (+) True G44486
TU55503 lncRNA downstream 288996 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA downstream 299959 31658326 ~ 31665161 (+) True G44529
TU55535 lncRNA downstream 426226 31784593 ~ 31871473 (+) True G44549
TU55549 lncRNA downstream 540254 31898621 ~ 31899202 (+) True G44561
AMCG00013451 mRNA upstream 206496 31149173 ~ 31150309 (+) True AMCG00013451
AMCG00013447 mRNA upstream 225591 31107642 ~ 31131214 (+) True AMCG00013447
AMCG00013446 mRNA upstream 312069 30985472 ~ 31044736 (+) True AMCG00013446
AMCG00013440 mRNA upstream 407455 30940080 ~ 30949350 (+) True AMCG00013440
AMCG00013439 mRNA upstream 448808 30906846 ~ 30907997 (+) True AMCG00013439
AMCG00013460 mRNA downstream 106327 31464694 ~ 31465848 (+) True AMCG00013460
AMCG00013459 mRNA downstream 126175 31484542 ~ 31491406 (+) True AMCG00013459
AMCG00013458 mRNA downstream 137752 31496119 ~ 31502050 (+) True AMCG00013458
AMCG00013461 mRNA downstream 258557 31616924 ~ 31641312 (+) True AMCG00013461
AMCG00013462 mRNA downstream 384440 31742807 ~ 31753408 (+) True AMCG00013462
TU55261 other upstream 579636 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 788586 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 861149 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1134596 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 1428108 29921067 ~ 29928697 (+) False AMCG00013375
TU55551 other downstream 546601 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 914901 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1064909 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 1064909 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1747925 33106292 ~ 33106595 (+) True G44870

Expression Profile