RNA id: AMCG00013458


Basic Information

Item Value
RNA id AMCG00013458
length 1692
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00013458
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31496119 ~ 31502050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTTTTTAggcttttatttgtaattgagATGTCCTCCCCAACACCGACATTTTATCCCCCACATTGCTGTGTATttgaatgtactgtatattcattattatctgACCTAACCGTGTACCTAATTGTTTGCTATTACAAAGTCagcattttataaacatttttgatAGGTGGCGCTATAGCAAGTTAGAGGTGTTTTCACGAAAGATACTTTAAGAGAAGGACTCTTTGGTCTTTGTCGAGTGGGTGTTGATTTTGGGGGTTAAAGGTTGTGTTTTGGTTTCGAGTATGGCAGCTGCGAGTTGGGTTCGATGGAGGCAACTGCCGCGGTTTGCTTCTCAGTTCAGCTGCTTATTTCGGCGGCCTGGACCGCTGCGACCAGGAGCTACAGTACGGCGAGTGAGCGGGACCCCCCGCGCTCGAATCGGGGAGAAGAGCAACGGGACGTGGGGCAAGTCTCGGGGCCCGGAGCCCCCGCAGTACACAGAACTCGACAAGGCAGATGCATGGATGCTGCGCAAGGCCCATGAAACAGGCTTCTTCATCCTAGGTGGGGTGTGCGTGTCCTTTGGGGGAGCAACTTATGTTGCCAACCTGCTGGCCCTGCGGAGGACCATGCTGCTGTCCCTGCCGGCCGCCCTGCTGCATGGCCTGGTGGTCACCTGCGCTGCCCTCTTCTGGCTGTGCGCAGTGTCACTGTATATTGGGCTGGAGGTCGAGATTGTGCatgagaaggaggaggagaaggaagagagggaggacGATGAGGACTGGCGGGGGCAGTGCCAGGACTGCCAGCGACGTGAAGAAGGGAAGACAAAGGAGCAGGAGGAGCAGGGGGGCAGTAAGGGGAAGTAAGGACAGCCTTTGTGAGCAATCTGTGTTGCTCTGCTCCAGTGACAGACTGAGGTGATTAtcttttgggggggggtggggtcatCTTCTTCAGCACTGGTTCTCAAGTCCTAGAGGAACCCCTGTGTGCCTCTTTGTccttccaactgagctcttaatcgAACCcatgatttaattaatgtttgtgttgtatCAACCTTCTTAGTTGTTCAAACAGGTGGAGATCAGTTGGGTAAGTATCTGACGAACTGCgtctggaatgaaaaccagaaacatggggagtcctccaggaccagggttgggaaacCCTGTTATTCAACACAAaactccaaccctggtcctggagagctacactgttaaaaaaatctaaaagcaaatgcatttttcatcttACAAACTGTTAAATATATAGACATGATAGTATTTGTAATAGAATATCCCAAATATGTAACTATCAAATCAATTATTGCCATCAGCAAGTTAATGTGATGTGACACATTttgatatatacagtgtatgtatgtatatagcaTCAACATCAGTGCAATCGCATGAGCAATTTAACACCgaaggaataaaaaaacacaatccaattatttttataatgcttgtatgtatttaatgtaattgatgCAAAAGCATTTATGAGTGTAATGTCAATGGATGCAATCTATAGTAGTAGTAAATTAGACAATTGAGATTAAACccaattaacttattttcagtGACTGTTTATCaattgattgtgtgtttttgtatgaatgtgattgtgtgtgaacACTTATCTTGATGAAGAACATTACTAGATCGAAACGttgatatgcatttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55456 lncRNA upstream 125117 31369207 ~ 31371002 (+) True G44486
TU55435 lncRNA upstream 185628 31303537 ~ 31310491 (+) True G44468
TU55436 lncRNA upstream 187896 31303537 ~ 31308223 (+) False G44468
TU55394 lncRNA upstream 389811 31099350 ~ 31106308 (+) True G44433
TU55343 lncRNA upstream 525619 30966909 ~ 30970500 (+) True G44388
TU55503 lncRNA downstream 145313 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA downstream 156276 31658326 ~ 31665161 (+) True G44529
TU55535 lncRNA downstream 282543 31784593 ~ 31871473 (+) True G44549
TU55549 lncRNA downstream 396571 31898621 ~ 31899202 (+) True G44561
TU55573 lncRNA downstream 528206 32030256 ~ 32030922 (+) True G44581
AMCG00013459 mRNA upstream 4713 31484542 ~ 31491406 (+) True AMCG00013459
AMCG00013460 mRNA upstream 30271 31464694 ~ 31465848 (+) True AMCG00013460
AMCG00013455 mRNA upstream 137752 31356805 ~ 31358367 (+) True AMCG00013455
AMCG00013451 mRNA upstream 345810 31149173 ~ 31150309 (+) True AMCG00013451
AMCG00013447 mRNA upstream 364905 31107642 ~ 31131214 (+) True AMCG00013447
AMCG00013461 mRNA downstream 114874 31616924 ~ 31641312 (+) True AMCG00013461
AMCG00013462 mRNA downstream 240757 31742807 ~ 31753408 (+) True AMCG00013462
AMCG00013465 mRNA downstream 270371 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013468 mRNA downstream 399480 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013469 mRNA downstream 413051 31915101 ~ 31921375 (+) True AMCG00013469
TU55261 other upstream 718950 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 927900 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1000463 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1273910 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 1567422 29921067 ~ 29928697 (+) False AMCG00013375
TU55551 other downstream 402918 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 771218 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 921226 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 921226 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1604242 33106292 ~ 33106595 (+) True G44870

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016698 True 1220 mRNA 0.46 4 NC_007126.7 8394819 ~ 8400091 (+)