RNA id: AMCG00013461


Basic Information

Item Value
RNA id AMCG00013461
length 1890
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00013461
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31616924 ~ 31641312 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTGGATGGCTTTGTGTTCGTGCTCAGCCATGAAGGCAGGTTTCTCTACATCTCTGAGACAGTGTCCATCTACCTAGGCCTCTCACAGGTGGAGCTGACTGGCAGCAGTGTGTTTGACTACATCCATCCTGCGGACCACGTGGAATTGGCTGACAGGCTGGGGATGAGGTCACACCTCAGGGGTGGGGCTGGCTCTCAGGCAGCCAATGAGAGTGCTTCCAGTTCAGCATCTACCTCCTCATTGGCTGAGACCCCAGAGCCAGTAGAGACCCCCAGCCCACTGCCCCCTGACGATGACCCCCCAGATAGAGGCTTCTTCGTCCGTATGAAGTCCACCTTGACCAAGCGAGGGCTACATGTCAAGTCCTCAGGCTACAAAGTAATCCACGTGACTGGGCGGATCCGCTGCCGTCCCGTCCTAGCCCATGGCCATTCCCTCTCCTTGCAGCACGCCCTGGGATTGGTGGCCCTGGCTCACACGCTCCCGCCTTCCACACTGAGCGAGGTGCGCATGGAGAGCAACATGATCTCGGACTATATGGACCTGAGCCCAGCAGAGGTGATCGGACACAGCTGCTACGAGTTCATTCATGTACAGGATGTGGACACCATTAGGCAGGGCCATGAAGACTGTGAGTCCGTCTGTCAGTCCATATGCCAGGTGGTGACTGGGTACTACCGTTGGCTCCAGCGTCGCGGCGGCTTCCTATGGATCCAGTCCTGTGCCACCATCTCCATCAACAATAAGACACCCCATGATCGTAATGTAATCTGGGTCAACTACGTGCTCAGTCGACCAGAGCTCCCAGACACCCCCCTGGATATCCAACAGCTGCCAGAGAGCCTGAGGCCTGAGAGAGTGACCCTGACACCCCCTGACCCCCCCCAGCACACCAAGGGTGTTTCTACGTCCCATAAATTTAAATGTGGCAGTGACTCAGGGTCAAAGGTGAGGGAGACATATCCCCCAGGCAGCCAATCGGAGGTGAGGAGGAAGAAGAGCCGGCGGCGCTTCTCTGAGGAAGGCCCCCTGGAAACCAAGAGTCTGCAGAAGGGGAGGGACAGCGAGAGTACTGCATCGTCTGAGGTGGAGAGTGACAGTGAGGGGGAGGGCAGGGTAGGGTACAAGAGGGTCAAAGCTGAGGAAGAGCAGCGGCACGAGACAGTGAGCGATGTGGAGACAGATGTGGAGGTGGGCAGTGAGCGGGGCAAGATTCAAAATGGACACCCGGTCATCCAGCATCTGAAACGGGCCACCCCACCCCACATAAAGACAGAGCCAGACTTTTCCACAACATCGGCAGGCGGAGGGGTGCTGGGGCACTGGGGCTGCTCCTCAGCCCACAtccactccacactgctgtccagCCTGCAAGGCTCTGGTATTCACAAtggcagctgccccccccagTTGGGCGTCCCGGACTCTGCTCTCACACCCCCCGGTGGAGAGGCCCCCCCTAAGAGCCTGTTTaccccctcctccccagccCTGTCCCCCCCGCTGTCGGGCTCCCCCCTCCCCAGAGAGGACAGGCTCCTACCGGGTGGGGACTATGAACTCCTGCACAGACTGGCAGCCGGGGGTGGCGGCCGGGTGCTCCTGCCCCTCCCCCCTGCTGCTCCAGGACCACAGAGCCTATACGCCCCCAGCACCATCCGCTATGCCCCTGCTGAGCTGTCCCCAGCCCAGCCGGACACCCCCCGCCTGGGTCTTCCCCAGGGCTCGCCCACAGACCCCAAGCCCCACTCCCTGTTCCCTCACCTGCAGAGGATCAGTGCACTGCCGCCCTTCAGTGGCTTCTCCTCCCCTGACTCGGCCTTCCCCCCCGGCCTGCCTTTCTGCATCAGTGGACTCCAGGGCACCACTAACAAGGAGGAGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55456 lncRNA upstream 245922 31369207 ~ 31371002 (+) True G44486
TU55435 lncRNA upstream 306433 31303537 ~ 31310491 (+) True G44468
TU55436 lncRNA upstream 308701 31303537 ~ 31308223 (+) False G44468
TU55394 lncRNA upstream 510616 31099350 ~ 31106308 (+) True G44433
TU55343 lncRNA upstream 646424 30966909 ~ 30970500 (+) True G44388
TU55503 lncRNA downstream 6051 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA downstream 17014 31658326 ~ 31665161 (+) True G44529
TU55535 lncRNA downstream 143281 31784593 ~ 31871473 (+) True G44549
TU55549 lncRNA downstream 257309 31898621 ~ 31899202 (+) True G44561
TU55573 lncRNA downstream 388944 32030256 ~ 32030922 (+) True G44581
AMCG00013458 mRNA upstream 114874 31496119 ~ 31502050 (+) True AMCG00013458
AMCG00013459 mRNA upstream 125518 31484542 ~ 31491406 (+) True AMCG00013459
AMCG00013460 mRNA upstream 151076 31464694 ~ 31465848 (+) True AMCG00013460
AMCG00013455 mRNA upstream 258557 31356805 ~ 31358367 (+) True AMCG00013455
AMCG00013451 mRNA upstream 466615 31149173 ~ 31150309 (+) True AMCG00013451
AMCG00013462 mRNA downstream 101495 31742807 ~ 31753408 (+) True AMCG00013462
AMCG00013465 mRNA downstream 131109 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013468 mRNA downstream 260218 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013469 mRNA downstream 273789 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013472 mRNA downstream 347378 31988690 ~ 31990176 (+) True AMCG00013472
TU55261 other upstream 839755 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1048705 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1121268 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1394715 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 1688227 29921067 ~ 29928697 (+) False AMCG00013375
TU55551 other downstream 263656 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 631956 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 781964 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 781964 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1464980 33106292 ~ 33106595 (+) True G44870

Expression Profile