RNA id: AMCG00013462


Basic Information

Item Value
RNA id AMCG00013462
length 3543
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00013462
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31742807 ~ 31753408 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAATATCCGTAACGTATCGCTTTCAAGGCCCTGTCTGGATTTCCTGCCTGGGAGACATAGCGGAGGTCTGAAGGGAAGGTCTTGTCAAAACAGACGATTAACCTCACATTTCATGTCAAATTTGTGATCGAATCAGCACCAGTTGATTAGTTTACATACTTTTAAACTATCCGatattttgttgtaaaatgATCCGCTTCATTCTGATCCAGAACCGAGCCGGGAAAACCCGCCTGGCCAAGTGGTACATGCAGTTTGACGATGATGAGAAGCAGAAGCTGATTGAAGAGGTGCACGCTGTGGTCACTGTGCGGGACGCCAAGCACACCAACTTCGTGGAGTTcagaaactttaaaataatctacAGACGCTATGCTGGCTTGTACTTCTGCATTTGTGTCGATGTGACTGACAACAACTTGGCTTACCTAGAGGCCATTCACAACTTTGTAGAGGTGTTGAACGAGTATTTCCACAATGTCTGTGAGCTGGACCTTGTGTTTAACTTCTACAAGGTGTATACGGTGGTGGATGAGATGTTCCTGGCAGGAGAGATTAGAGAGACCAGTCAGACCAAGGTGCTCAAACAGCTGCTGATGCTGCAGTCGCTGGAGTAGGATCTCCAGGAAGATGAAGCCCCTTACCACACCCCTCAAAAGACTCCGCCCCTACCCTAGTTAGACTATACTGAGAGCTTCACCCCTCATTGCTGTGGAGCTGCAGTCTCTGCTCCCCTCCCAACTACACACCTAGGCAAATAAACATACCTGACTCCTCCCCTCCCACTACCTGACCCCACATTGCCATCGGAGACCCGGTATCTCCGCTCTTCACAAACCCACTGTCAGATGCAGAGGTTTACATGCTCACTGTCTTGACTTCTCAGTGGATTGTGTATagctgatgaaaaaataaattgcattatttttgctCCTTATAACTTCAAAGTCCTGATAAAGTGCATTGAAAACTGATGGCTTGTAAATTGGTCTGAATGttagaaatgtatgtaaataccTTCAcctatatttacatacacagagagcgagagagagcgaaaTGATTCAGAATATTTAACAGTTAACAGTAAACCACTGCACAACTATAAGCTAATAAGACCTAATGTTCTTCAGTAAATTAAGGAAAGTAACTGATGTGTACATAGTAGGCCTGCAAACGTTTGCATCTGACAGTTCATTGGATCTCCAGCCCCCTCAGACCTACTCCGCTCTCCCCAGCCCTCTTCATTCACACACTACACTCTGAGAATCACGAGACAGACCTGGTAGGTGGGCAGGCAAAATGTGTCCATGTGACCATTGTGCGCAATTCCCCTTCAGCAGAGTGCAAACAGGTGTGTGGCTGTGTCCCTGGCCGTTCCTCATTAGACGCAGAAGGAAGTGAACGTCTGTTGAAGAGCCAGCTTTCAGTCCTGACCGTTCCAGTGTTAGTGTTGTTCAGTCTTAAGTTAAAAGCTCTCTTGTTTTTTGCTATGTCTGTGCTTGGCTGACTCACCTTCATCCTACATTCTTGCATATTCCGGGAGGTAACAACTACTCCGCACctggagagaaaataatacattttgcctGATTATCCAATAAATTATGTGATCAGCTAATGAATTTAAATCAAACGCGCAGTAGAAAACGGCAGAAAACAATACCTGCACATCCCTGAAGTTGGCTGttgctgctttattttctcTAAGCTAAATGCTTGGTCTGAGATGTTTAAACCTATACCTACACTACAAAAACTAGTGTAATACTGCtgaaagcccccccccccacacctctcCAAGAGCTTGCACCAGCACCTGTTTGCACACTTGTTCCCAGACAAAATCTCTAAGCATGGTAAAAACAGTGGTCAAGAGCCCAGGAAATAAGATCCTGTTAAGGCCAGCATTGTCCAAGGTCTGCAGTTGTTTCCAGACAGTGTGACCTCCAAGCGATGTGGGGGGTCAGGTGTCTCCTGTGAAACCTGTAGATCATCCTAGAAATTTCATAAAAACAGTGCTACTCTCAAGTTGCCTAGAGGGACTCATTATTCAGCATTTTACTGGCAGTTCCAGGTTACAACTGGTGCTTAGTCactgaaaaaactgaaagaaatttaataatcaatttattttttattttttttgtaatggtataatattgtttatatatacatttatgaagtctttttgtttattttttgtgaaaatgttttacaatccATTCCAGCCCTGAACTAGGCCTTCATATAATCCAGTCAAACCCCAATCGTGTGTCTTCATTTCCACCTCTCTTGGGTGCGATGCAGACAGGTAGGGATCTCTAGCACCTCTTTAACTGTAGGGTAGTCACCTTATCTTAGCTAATGAAGGCacttatgtattatgtattgcaaatttgaatttaaaacaaggactGAGCATGGAGGTGTAGTTGTAAAACCCAAATTTTAATGATGACCTTTATTTTGATTAAGATTACCTCCATTTATTCATGGTGCACACACTCACCTGATGCGTAGGAAAATGTGAGAAATAACATAAGTGTGTTGCCCTGGACAGAGCTGGAATGGAGtggctgtttttcttgttctacTAGGGACCAGGGAAGGGCTGGGGGGGGCTGTGTTGTGAGTTTGTGTTGGACCTGCCCTACTGTTCCTCAGCCCACCCCACCATTGCCACCTGCAGTACTCCAGCCTGAGACATTAGCAGACAAACAGGTCTTGGTTTTCAGTAACCTTAGTGCACAAATTGATCAAAAGCTAGATGTTTTCACAGCGTTAGTGAATGGGTAGTTTTACTTTTACTTCTTAACCCCTTTTCTGAGAGTAACACATTTTCCCCATGCAGTGTAGCAGCTTAGAGACTTGCGCCTACGGTTCTCTATTTGGCTGCTACTCCTGTCAGCAACTCGTTGTGTACAGAGGAGTGATGAGCTTTACAGAATGAGACATCCGACTCGTTATTGCCTCAGAGCTGCCGAGTCACCTACCTGCACTTCTACACTGAACCCTATGATGCTAGAGATttcatagaaagaaagaaagaaaaaaccctATGCATTAAAGAATTTAAGTCTGTTAAATTGAGGATTACACAGAAGAAACAATGGcctcagtgttgtttttttgggacACCAAAGCCTCTGCTAATCTCCAGGCCTGGCAGGGCTGACTTGTGCTATCAGTACTATGGGTTTGAGTTGATGGTGTTTGATATTGAGCCATGTGTttagtacaaaaaataaaattaagtaatgaatACATGATCCACATTCTTTAagtaattttttatatatattttttttttgttctgtaattGCTGACTGCCCTGCATAGATTTGAGAGTGGAGGTGCAGCATCCTGTTGTCTGTCTGATCCAGCCCGGcctgtgtgtgaaatgtgtgcgagtgtgtgtttTACTGAAAGCTGTGTTTGGTGTTGCTGTTGTCATTGCTGTGTGTCATATCTACCATATTCACTCaatgtatatacaataaaaaacaaatgtggaatAAAGTTATATGGGAAAATTTA

Function

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II biological_process
GO:0050690 regulation of defense response to virus by virus biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0016032 viral process biological_process
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K11827 AP2S1; AP-2 complex subunit sigma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55503 lncRNA upstream 77646 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA upstream 77646 31658326 ~ 31665161 (+) True G44529
TU55456 lncRNA upstream 371805 31369207 ~ 31371002 (+) True G44486
TU55435 lncRNA upstream 432316 31303537 ~ 31310491 (+) True G44468
TU55436 lncRNA upstream 434584 31303537 ~ 31308223 (+) False G44468
TU55535 lncRNA downstream 31185 31784593 ~ 31871473 (+) True G44549
TU55549 lncRNA downstream 145213 31898621 ~ 31899202 (+) True G44561
TU55573 lncRNA downstream 276848 32030256 ~ 32030922 (+) True G44581
TU55582 lncRNA downstream 300325 32053733 ~ 32057626 (+) True G44590
TU55590 lncRNA downstream 382822 32136230 ~ 32138577 (+) True G44598
AMCG00013461 mRNA upstream 101495 31616924 ~ 31641312 (+) True AMCG00013461
AMCG00013458 mRNA upstream 240757 31496119 ~ 31502050 (+) True AMCG00013458
AMCG00013459 mRNA upstream 251401 31484542 ~ 31491406 (+) True AMCG00013459
AMCG00013460 mRNA upstream 276959 31464694 ~ 31465848 (+) True AMCG00013460
AMCG00013455 mRNA upstream 384440 31356805 ~ 31358367 (+) True AMCG00013455
AMCG00013465 mRNA downstream 19013 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013468 mRNA downstream 148122 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013469 mRNA downstream 161693 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013472 mRNA downstream 235282 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013474 mRNA downstream 472763 32226171 ~ 32226557 (+) True AMCG00013474
TU55261 other upstream 965638 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1174588 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1247151 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1520598 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 1814110 29921067 ~ 29928697 (+) False AMCG00013375
TU55551 other downstream 151560 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 519860 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 669868 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 669868 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1352884 33106292 ~ 33106595 (+) True G44870

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU412423 True 1648 lncRNA 0.42 5 CI01000154 981793 ~ 991232 (+)