RNA id: AMCG00013467


Basic Information

Item Value
RNA id AMCG00013467
length 1038
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00013467
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31760256 ~ 31781607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGTTGTTTGGTAGGAAGCGGTGTGTCCGCCATCCGTATCCACAAGCCggagttattaaaaataaaaacgccattaaatatagataaaacatcaatataaaCAGCACTTCAAACGACAAGAAGCCTGTTTGTCGTTTTAAGAGTCCACGGCGACTGGACACAAGGGGACGGCAGACATGTCAGAGACGTACGatttCCTGTTTAAGTTCCTTGTGATCGGCAGTGCTGGCACAGGGAAATCGTGTCTCCTACATCAGTTCATTGAGAACAAGTTCAAGCAGGACTCGAACCACACCATTGGGGTAGAGTTTGGCTCCAGGGTGGTGAATGTAGGGGGGAAGACAGTGAAGCTGCAGATCTGGGACACAGCCGGTCAGGAACGCTTCAGCCCCAATATTGTTATCATCCTCTGTGGGAACAAGAAAGACCTGGACGCTGACAGAGAGGTCACCTTCCTGGAGGCCTCCCGTTTCGCCCAGGAGAATGAGCTGATGTTCCTGGAAACGAGCGCACTGACAGGGGAGAATGTGGAGGAGGCCTTTCTGAAGTGTGCAAGGACCATCCTGAATAAGATCGAGTCAGGTGAGCTGGACCCTGAGAGGATGGGATCTGGTATCCAGTATGGCGACGCCTCCCTGCGGCAGCTCCGGCAGCCTCGTGGCACCACGGCACAGAGTAAACAGCAGTGCAGCTGCTAGGGCCAGCCTCTCCCCGTCCCGCCCACACAGGACCTGGTCCAGctctgtctctgtccgGGTTTACAGCGAACTCACCAATGCCCCCCacgccacccccacccctctctacAAGCCCCAGACTAAAGTTAGACCAACCCTTCCCACAAACAGACTCCGGTCTCCTTGGATTGGCGTGCCTTGGCCTGCGACTTCTGACCTCTCCAGCCCCTTTCTTGGAACAGGCAGCAGGGCTGTGAGACCCTCCTCATCACTGGAGCCGGGATGCCCTGCTAAGGCAGTGTGCTAGTCACTGGGATACACCGTGGGCATCGCACTGCTATGGCATGTCTTAACCAAGGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55514 lncRNA downstream 20330 31739676 ~ 31739926 (-) True G44538
TU55501 lncRNA downstream 114232 31645591 ~ 31646024 (-) True G44528
TU55492 lncRNA downstream 253538 31506168 ~ 31506718 (-) True G44519
TU55479 lncRNA downstream 267748 31454051 ~ 31492508 (-) False G44507
TU55480 lncRNA downstream 267748 31461826 ~ 31492508 (-) True G44507
TU55575 lncRNA upstream 206292 31987899 ~ 31988404 (-) True G44583
TU55576 lncRNA upstream 206896 31988503 ~ 31989566 (-) True G44584
TU55579 lncRNA upstream 246328 32027935 ~ 32030938 (-) True G44587
TU55589 lncRNA upstream 293613 32075220 ~ 32076503 (-) True G44597
TU55608 lncRNA upstream 403931 32185538 ~ 32185802 (-) True G44612
AMCG00013463 mRNA downstream 64543 31688510 ~ 31695713 (-) True AMCG00013463
AMCG00013464 mRNA downstream 87885 31666716 ~ 31672371 (-) True AMCG00013464
AMCG00013452 mRNA downstream 372213 31372000 ~ 31388043 (-) True AMCG00013452
AMCG00013454 mRNA downstream 406632 31312138 ~ 31353624 (-) True AMCG00013454
AMCG00013457 mRNA downstream 462845 31294458 ~ 31297411 (-) True AMCG00013457
AMCG00013466 mRNA upstream 77513 31859120 ~ 31863334 (-) True AMCG00013466
AMCG00013470 mRNA upstream 88654 31870261 ~ 31891494 (-) True AMCG00013470
AMCG00013471 mRNA upstream 273029 32054636 ~ 32065898 (-) True AMCG00013471
AMCG00013475 mRNA upstream 319961 32101568 ~ 32116327 (-) True AMCG00013475
AMCG00013480 mRNA upstream 626766 32408373 ~ 32411868 (-) True AMCG00013480
TU55168 other downstream 1273925 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 1273925 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 1273925 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 1273925 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 1282062 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 784153 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 840574 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 1896617 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 1911237 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 5177570 36959177 ~ 36959914 (-) True G45468

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017796 False 4090 mRNA 0.38 7 NC_007126.7 8813831 ~ 8856785 (-)