RNA id: TU55551


Basic Information

Item Value
RNA id TU55551
length 2866
RNA type TUCP
GC content 0.40
exon number 5
gene id AMCG00013468
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31901530 ~ 31911801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cattgtaaatGGGAAGCTTTAGTAAATGTTTTAAGAGTTCAGTTACTTGTAGTTTGGGCTGGGTAAAAAGATGGATTTTCTGATTAATTGCGATTGTGGTTTGGACGATCTGATATCGATCTTATGAATCTATGCATTTTCTCATTGAATGAAAAAACGGTGCTGTCTGGCCAAATATATGcgtgaagaaaattaaaaaaaaaaaaaactttaaagcacaagcgCACATGCTCTGCCCCTCTCTCATTTGCCAAGGATAGAGCCACTCTGCACGCACCCCCGACAAATACATGATCCCCCCCCCAAGCTCTTCAATACTCAATTGGGCAAGGAAGAACCATCACTCAAACCTAGTgaaccaatggagacccatgatctaTGCCTCCCTCAAAGCCCCGCCCTCACggcaaaacagtgccaaaactcgtaaacggggaaaaaaaaaagtgaatccaAAGACAGCAAACATTGCAGCATCGTAAGCAAAGGCAGCGACTCCAGGGCAGTCAAGACAACATGAGCATCACCCTCGTCTGCTTTCCTGGAGCCCCCCAGGTGTCTGAGGATGCTATTCATCGTGAGGCAGAGCTAGAGGAGCTACTGGAGAGCAAAGTGGCAGATATTTTTGAGGAACAGCGCAAGAACGGCATACCCGACCTACTGTACGTGATGAAGTACTTGGCGTCTGAGAGGATACCAGGGCTGCCACCTGGTGGGGGTGTCACCAGCAAGAGGGACTGCATCATCTCTGCCTATTACAAACTGAGACAAGAATTCACAATCCAGGGGTCATTGGACATCATTGGGTCCGAGGATTCCAGTTAGCAGGTGGTTCCCATGGAAAGAGTCGTAGCCACAGAGTCTCCATAAAAAACACCTCCACCTTTGCTCTCTTCTCAGCCTTCATGAAAAAAAGCTTGCCTCCATTCTGAAGATCTCGCAAGATGGAAAGAATATGGATTGCATGTGACTGACAATCAACATACAACCAGGCCTGCATGGagattgaaaaaaacaacagagcaATAATCAGAATATTTAACTATTCCAGAGAGACATTGCCATCTCAGTGTAAACCAATCAACTATCTATAAGTATTTGTGCAATGGCCATAATAAATGTTTCTACCTATATTGCAAGCAGCTAGTCAACACTTTTGTGTCCTAATGAAATACTGAAACATTGCACTTAAGCAGCAGTTTATATGGACATATTGAATGGtctgcattatatattttttttttacaaaacaggGGTAGACCAGTACAAGTCCTTCTAGTCTATTCCATTGTAAGATTTTGGCACAACATGTTTGCTAATCCTTTAATGGAATCAATTATTACATTAAGCAACTGGTTGTACCAAAGACCTGCACTGTGATAGATTGGTTAGGACAGCCCCTGGTCTAAAAGAACAGTGATAACCATGCACCTTTCAGTATGTCCCCTCCGAGTGAGGTTTATAGCCGAAAACCCTCAGATCTTTCCAAGATGATTTGCTGATGACTCCTTTGTTCCTTTTTAGAAATAGAAGATTCCTCTGTAATATTCTGTAAAAGTACCCTATAAAAACTGTTCTCAAACTTCCATGTACCTTCCAGGTGAAACCGACCTAAGGGTTATAGTCTTGGCTGTGTACTGAGATTCAGTAGCTGCAAAGAACACAACCCTTGTGCGGTTGCACCTGCAGGGACTGTACATAGACTAGCTCTTTCCCACCTGTGTCCATCTTCTTTTGAATGTACTGTGCTGCCTTACTGTTTGTTACAAGAAATTCtgtgctaaataaaataaattataacaatttGTTAATAAGCTGAAGGTATTTAAATGGTTAGCGATAGATGAGGTCCTGCCATATTCCAATTCTAAATAGTGGAACAGTGAAATTTTCCCAACAGTCTGAACATCTGCCTCAAACTCTGTATTGTGCttgatgcatacatacattttccttcctttctATACATATCCAAAGTTAATAAACACAGCTCATTACCACCCTTGTGctaacaaaagaaaaattatGACAAATCACCAGTGTTCCCaatgaaaacagaagaacaaagcTGTGGTATAATAACCAATGGAGCATGTGTGTAACCCCCAGCTATTTCAGCCAGTGGTGTCTGGGCTACAGGACCAAAACTGAATAGAGATGCTGTTTATTTGAAGATGGCAGGGCTAAGTATGTTAATAAGATGTTATTGTAAGTGTAcactttttctatatttttttcccctcactcacatttaactgaataaataacttGTGTCAAATAGTGTGATTTGGATTACTTTGTGGCACACTGTTAATACTGAGAAGCCAACACACAGGCAAATGATCTTTCTTTAAATCAACACAGTAcacacttcctgtatgttgatTTTAAGGGGGAAGTATTTCACAAAAGACTATGATCACAAGCTGGAATTCAGCAGTCAACTGTGTACAATTACAGGGCTTCAAGTATGGCCAGCTGTAGCAGGAAATAACCTGGGGACTAATTCTGTGAGCAAGATGTTTCCTGAGGATTGAGGGACTGAGGTTAAATGGATTTAGCAAGGTTCAGTAATATTCTAGAAGTTCTTTTCCAGCAAAGCAAAAGGATGAGTATACATCATACCCCATCTAAATCAATACAGAACCACAATCagctctgtttttaaatatcaaaaataaaaatgttattaacgGTTTTCAATCACAGAATGGCTGGTGCTTGTGTCTTTAAACTCACATAGGTTTTCCTCAGAGCACTGTctaatgttaattaaaacacttcatattaaaagaaacaaaacaaagaaaatacctATATATGATGCATGTTGTGCTTACAGATCAAATCTGCGAATAACCTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55549 lncRNA upstream 5766 31898621 ~ 31899202 (+) True G44561
TU55535 lncRNA upstream 33495 31784593 ~ 31871473 (+) True G44549
TU55503 lncRNA upstream 239807 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA upstream 239807 31658326 ~ 31665161 (+) True G44529
TU55456 lncRNA upstream 533966 31369207 ~ 31371002 (+) True G44486
TU55573 lncRNA downstream 118455 32030256 ~ 32030922 (+) True G44581
TU55582 lncRNA downstream 141932 32053733 ~ 32057626 (+) True G44590
TU55590 lncRNA downstream 224429 32136230 ~ 32138577 (+) True G44598
TU55609 lncRNA downstream 279378 32191179 ~ 32191395 (+) True G44613
TU55621 lncRNA downstream 371813 32283614 ~ 32284951 (+) False AMCG00013473
AMCG00013465 mRNA upstream 131775 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013462 mRNA upstream 151560 31742807 ~ 31753408 (+) True AMCG00013462
AMCG00013461 mRNA upstream 263656 31616924 ~ 31641312 (+) True AMCG00013461
AMCG00013458 mRNA upstream 402918 31496119 ~ 31502050 (+) True AMCG00013458
AMCG00013459 mRNA upstream 413562 31484542 ~ 31491406 (+) True AMCG00013459
AMCG00013469 mRNA downstream 3300 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013472 mRNA downstream 76889 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013474 mRNA downstream 314370 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013473 mRNA downstream 361628 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013479 mRNA downstream 434337 32346138 ~ 32389962 (+) True AMCG00013479
TU55261 other upstream 1127799 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1336749 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1409312 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1682759 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 1976271 29921067 ~ 29928697 (+) False AMCG00013375
TU55622 other downstream 361467 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 511475 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 511475 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1194491 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 1464719 33376520 ~ 33394148 (+) False AMCG00013515

Expression Profile