RNA id: AMCG00013469


Basic Information

Item Value
RNA id AMCG00013469
length 3605
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00013469
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31915101 ~ 31921375 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACCAACAGAGAGGATGCCGCTGAAGGTGGACAGTGCCCCCATCTATGACCGCATGCCAACAAGAGGGGAGGCTCTGTGCATTGGTCTGGAGGGATCTGAGAGAGTACCACTCCTGATTCCAGTTGAGCATGAGCAGACCTATAAGCTGCTGGACaaggaggagctggagagggTGGCAGGAGGGCCGCGATGGAGGGCCCTGCGCTCCAGACTTGTCCTGCTCTTTTGGCTGTGCTGGCTGGCCATGTTGTGCACTGTCATAACCATCATAGTCTATAGTCCACGGCCCCAGGCCCCACAACTGCAATGGTGGCAGAGGACACTGTTCTACCAGTTGCAGCCTATGCTGTTCCTGGACAGCAACCAGGATGGGGTGGGTGTCATCCAAGggatCAGCGATCGTCTGCCCTACCTGCAGTCTCTGGGGGTGGGTGCTCTGATTATTGGAGGCCTTCTGCCCAGGAGAGAGCGAACATTGCCCCCCACCCTGACCAACATCAACCACACACTGGGCACCATGACACAGTTCCAAGACCTTGTCACCCATGGCAATGCTATTGGTATGAAGATCTTGCTGGATCTCTGCAATGAAAACCTGACTGATTCTAGCAATGTAATGAAGCTCTTGAAACGTTCTGCCAATCAGTCCCTGCCAGATCAACCCTTCCCTCAGTCTGGCACAGTGACAGGCAGGAGACCCCTGATGAACTGTACTTCACTTCAATTTGCAGCACCAGGACTTGAGTACTGTAGATATTGTGAACCTGGGCTGGAGACCTCTGGGCTAGAGAaggtgtatagtgtgtgtacaTGGTCTACTTTCTACATATTCCTTCCTCAGAGTGCTTTGCAGTTCTGGTTGCAACAAGGCTTGGCAGGCTTCAGAATATGTGACACAGATGCAGTGTATTCAGAAGAGTCTCTGTTGGAATGGAGGTCAATGGTGAAGCAATTCAGCACTGAGGGCAACGAGAGGATCATGGTGTGGCAGGTCAGTGCAGACACGGTGAACAGCTCCATGGCTGACCTCATCACCCGTCCCCTGCTGCCATCTGTGCCACACATTCTCTCTGCACAGGAAGTGGGCACTGCCATAGAGATGGCCCTGCAGAGGCCCCAGGGGGTGTGGCCAAGCTGGACGATTCGGGGTCCCTCAGTGGGACATGTGGCCTCAGTGGTTGGGGGGCTGCACAGACTATTTGCTGTATTAGCCCTCACCCTGCCTGGGACACCCATCATGCACTATGGAGAGGAACTCGGCCTTGGCCAATCACAGGATCAGTCACTATCCCAGAGCTCCATGTTACGTCTGTTCCGCTCCCTCAGTAACACCCGTTCACGGGAGGATGCACTGCTTTTCGGCAATTTCACCCTGCTCCCTCCCTCCAATGCCTCCTCAGTCGCttccgccccctccccctcaccccCCATCCTGGCTTTCCTGCGTTCCTGGGGCTGCGTTCACTTCTTGGTGCTACTGAACTTTGGAACAGGCAAGGAGCCGCTGGAGCCACAGTGGGCCTTTAGCCTGCCCCCTCATGGTGTGTTTGTGGCCAGCACAGGGATGGATCGGCTGGGGGTGGTATCCCTGGAAAGGCTGAGGCTCCGTCCGCAGGAAGCCATGGTCATCAAGCTGTTAGAGGCTGGTAGCTTCTCCTAGAGCCCAGGACAGCACTCTGTCCAAGGCAGAAAAGGCTACCATTTAAAACCTCCACTGTATCAACTTACATTGCCATCTGGAATTttggcatgttttgttttgattgatgaCCATTAACCTTGCATTTAATATAGTGTCATGCATTATACGCTGATAATAACACGATTGACTAATGTGAATGCTATCTTTTGAGAACATGTTGTACAATTTTCTGTTCTACTATAATTGTCTAGTGAGGGAAAGCACAGTGAAAGTAGGGTACAGCTATGGATATCTGCTGTGAAAGCCAAGtatgaaaaataactatttaaagtGAGTTAGTGTATCTGTGATTTAAGCATACTATATAAACATAGATAGGTTAATTTTCAccttgtaaaatacaaatgcaaacatacCAGTTAGATTTTTCTTTGGGGGAGGacttgaaattgtattaaatacaggagaggttttattttgggtttatgcattttcttggtaaatggaaagtttttttttattcactctgtattgattaaatgtttctaattttaatGTTCTAGAATTTAATAGaggtttacaaataaaataaaatatgctgtaGTTTTTCTGGAGAGGCggattactttttaaaatgtatcagtgtTTAACACTTTCTCAAAATGATGTGAGTTTTGATTCAGTGTGGCTCAGgatagattaattaaaatcataaatacattgtattttaggaCAGCAGTCTGTCAAGGTGAACAGTCTTATCAAGGACAGGTTTCCTTGAAGGTACTTGTTTGGACAGGGTAGTTGATTCAGCTGTGAGAACAGAATGCATTTGTGGAGGgtgcattgtttattattgcCACCAGAGGGCAGTGATGACTAAGCCTAAGACTGGAGAAATTTTGAGAAACATTAGGTTGCAGTAACAGGTTTatttcattgaaaaaaaaaaaaagttacttaaGCCATGGATAGTTAatcttattattgtatttagtcTAAAtgttatacaatatatatatataagtttaaaGATAAACTGTAAATCCTAGATAAAAATGTTATCCTTTGATTGGTTAAAGGAATAGATCTTGAACAGGGGCAATTACTGACGAAAAGAAGTGGGtttcaaaatgattaaaaacaaatctgacattTAGTGGCAATGACATCATAAAAGACTACAAGGGCCAGAATTTACAATTGGAAATTAAGATTAAACACGTTTATCATTCCACGTTCCACATTTGGAAAAAGCTTCCCAGGCACAAAGCCGAACTTCACTGAACTATCTGTCTTGTGTTCTTAGTCTCTGGGGAAAACATTCTCTTGGAAATGTCTTTGAATCATTTTGACAAAAGATCAAATGttcatgtaattattatgtatttatttatttaaatgttaaactccCATAGGAGACAGAATATTCTGAGATGCGCTGTATTGTATAGTTCCATGATAAAAGCCTTCCATGTACTGCCCAGATGCTTTTCTTGCTGGGGGATGAGTTTGTTTATCCTGGTATCATTGTTATAGGAATGGAATAAGACTGACATGGGAAGACAGTTCAAGGTCTGTCTCTCAACCTATCCTGAATGAGCAGTCAGAAAAGAGTGGGATATTTACATCAGATCCACTTACTGTCAGACACTTCATAGCTACAAGATACCTTTTAACAAACAGCCTTTGTCATGCCAGTAGGAGACTAATGGATCAGAGAAGGAATATTTCAAACCTGAGCTTGAATTCAAATGGCTAAAGCTGCCAGCCAAAGCCCAGACAGAgactgaagaataaaaaaaataagtggtGTTGAATGGGGTATGATCAATAGAACTATGCGATTCatttctacaaaaaataatacaaatcaacagATCTGTACTTTCTGCAGGGGGATTGTGGGCTTTTTTCATGTTGTTCAACCAGTAACTTTGTTTCTCTTGATAAACAGTCCC

Function

GO: NA

KEGG:

id description
K14210 SLC3A1, RBAT; solute carrier family 3 (neutral and basic amino acid transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55549 lncRNA upstream 15899 31898621 ~ 31899202 (+) True G44561
TU55535 lncRNA upstream 43628 31784593 ~ 31871473 (+) True G44549
TU55503 lncRNA upstream 249940 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA upstream 249940 31658326 ~ 31665161 (+) True G44529
TU55456 lncRNA upstream 544099 31369207 ~ 31371002 (+) True G44486
TU55573 lncRNA downstream 108881 32030256 ~ 32030922 (+) True G44581
TU55582 lncRNA downstream 132358 32053733 ~ 32057626 (+) True G44590
TU55590 lncRNA downstream 214855 32136230 ~ 32138577 (+) True G44598
TU55609 lncRNA downstream 269804 32191179 ~ 32191395 (+) True G44613
TU55621 lncRNA downstream 362239 32283614 ~ 32284951 (+) False AMCG00013473
AMCG00013468 mRNA upstream 3930 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013465 mRNA upstream 141908 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013462 mRNA upstream 161693 31742807 ~ 31753408 (+) True AMCG00013462
AMCG00013461 mRNA upstream 273789 31616924 ~ 31641312 (+) True AMCG00013461
AMCG00013458 mRNA upstream 413051 31496119 ~ 31502050 (+) True AMCG00013458
AMCG00013472 mRNA downstream 67315 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013474 mRNA downstream 304796 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013473 mRNA downstream 352054 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013479 mRNA downstream 424763 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013477 mRNA downstream 472443 32393818 ~ 32400452 (+) True AMCG00013477
TU55551 other upstream 3300 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1137932 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1346882 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1419445 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1692892 30218910 ~ 30222209 (+) False AMCG00013396
TU55622 other downstream 351893 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 501901 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 501901 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1184917 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 1455145 33376520 ~ 33394148 (+) False AMCG00013515

Expression Profile