RNA id: AMCG00013472



Basic Information


Item Value
RNA id AMCG00013472
length 813
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00013472
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 31988690 ~ 31990176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTACCAAATGAGACCTGTGAGAACACCACTAGGATCCACGCTGATGGAAACCCAGTGGCCAGCACTGTGATGTTCATCGCTGGGGTGGTGGGCAATGTCGTTGCACTGGCCATCCTGGGCATCCACAGAAAGGAGCACCGGTCTAAGTCGTCAGTGTTCTGCATCCTGGTAACCGGACTGGCCGTCACTGACCTGCTGGGCACCTGTTTCCTCAGCCCACTGGTGTTCGTTTCCTATGCCCGCAACACCTCCCTGCTGGGGCTGGTGGGCACCCATGGCCTGTGTGACTTCTTTGCCTTCGCCATGACCTTCTTCGGCCTGGCCTCTATGCTGATCCTCTTCGCCATGGCTGTGGAGCGCTGCCTGGCCATCAGTCACCCCTACTTCTACTCCAAGCACATCAGCCGCAGCTTTGCCAAGGTCCTCCTGCCACTGGTGTATATTTTCACTTGCATTTTTTGCACCCTACCCTTCCTTGGCTATGGCAAATATAAGCAGTACTGCCCAGGGACCTGGTGCTTCATCAAGATGGAGGTCGGGGAGGGTGATGGCAGCCAAGTGTTGGCCTTCTCACTGTCCTACGCCACACTCATGGCCTTCCTCATTGTCGCCGTCTTTCTGTGCAACGGCTCGGTCATCGTCAGCCTGTGCCAGATGTACAAGAACCAGCTCAGCCGCCGGGGCTCTGTAGTCTCCTCCAACCGCAAGAGGAAGAGCTGGATTGGCCAAGGGGAGGAGGAGGTCGACCACCTGATGCTTCTGGCCTCCATGACCACCATATTTGTCATCTGCTCGCTGCCCCTCACTTGA

Function


GO: NA

KEGG:

id description
K04263 PTGIR; prostacyclin receptor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55549 lncRNA upstream 89488 31898621 ~ 31899202 (+) True G44561
TU55535 lncRNA upstream 117217 31784593 ~ 31871473 (+) True G44549
TU55503 lncRNA upstream 323529 31647363 ~ 31665161 (+) False G44529
TU55502 lncRNA upstream 323529 31658326 ~ 31665161 (+) True G44529
TU55456 lncRNA upstream 617688 31369207 ~ 31371002 (+) True G44486
TU55573 lncRNA downstream 40080 32030256 ~ 32030922 (+) True G44581
TU55582 lncRNA downstream 63557 32053733 ~ 32057626 (+) True G44590
TU55590 lncRNA downstream 146054 32136230 ~ 32138577 (+) True G44598
TU55609 lncRNA downstream 201003 32191179 ~ 32191395 (+) True G44613
TU55621 lncRNA downstream 293438 32283614 ~ 32284951 (+) False AMCG00013473
AMCG00013469 mRNA upstream 67315 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013468 mRNA upstream 77519 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013465 mRNA upstream 215497 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013462 mRNA upstream 235282 31742807 ~ 31753408 (+) True AMCG00013462
AMCG00013461 mRNA upstream 347378 31616924 ~ 31641312 (+) True AMCG00013461
AMCG00013474 mRNA downstream 235995 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013473 mRNA downstream 283253 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013479 mRNA downstream 355962 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013477 mRNA downstream 403642 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013478 mRNA downstream 433586 32423762 ~ 32455686 (+) False AMCG00013478
TU55551 other upstream 76889 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1211521 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1420471 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1493034 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 1766481 30218910 ~ 30222209 (+) False AMCG00013396
TU55622 other downstream 283092 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 433100 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 433100 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 1116116 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 1386344 33376520 ~ 33394148 (+) False AMCG00013515

Expression Profile