RNA id: AMCG00013473


Basic Information

Item Value
RNA id AMCG00013473
length 1557
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00013473
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32273268 ~ 32284951 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaagggggaggagagagagagagactaggACAACAGGCAGTGCAGGTTACAGAAGCTGCTCTTACTGATTTAGTTTTCTACCTCGTAGACATCTAGCGACTGTGGAATGGCAAAGAAGGGGATGAGCTGTGGCAGCAGTCAAGGATGAAGGCTTGACTTCCAGGAGAGAGAACAACAGTGGCTACAGTGGCCCCAGGAAGAGACAGGCaaagagcaggaggaggaggagagaagggtCTGGAACTCTGGACCTGAAGACCAAACCATGGACTCTGCACAAATGTTACCTCCCTTGGACATCTACAATGTTCCCTGCTAATCTCCTGGTCCTGATGGTCCTGTTGCTACCTCAAGTCTTCTCGGGAGACCAACGGGGTGTGGACTCGAGCCGCCTGGCCCGTCTCGAGCCCAGCCTGGCCCAGTCCATCCAGAACCTTCTGCTGACTCGGCTGGGCCTGCGGAACCAGCCTGCTCCCCAGCCTGGAGCCCCAGTCCCCCAGTACCTCCTGGACCTCTACCGCTTTCACTCCCAGGAGCCACACCTAATCCAAGACCGAGACTTCAGCTTTCCAGTCCAGCACACCCAGAGCGCCAACACCATTCGCAGCTTCCATCATCTGGAGTCTCCAGGACACCTTTACCCAAGCAGCCTGGGGAAAGCCAACAACTTCCAGATCATCTTCAACATTTCCTCCCTCCCTGATGATGAGCAGGTCACCTCAGCCGAGCTCCGCCTCTATCGGGTGCAGTGCTCTGGGGACTCCAGGGGGGGACAGAGGGTTAACCTGTACCACTTCCCCAATCCCGGGAGCCCTCTCGCTGCTGCCAGGCCCAAGCTCATGGAGTCCCGCCTGCTGCCTCAAGACCCAGATGCCCCCTCCTGGGAGAGCTTCAGCCTAAGCACAGACTTATTCACCCAGAGTTCTGGCCTTTTAGTATTCGTACTGGAAGCGGTGCCCTTGAACACTTCCTCTAGGCAGCCAAGGGAGCACTTGCGAGTGCGGAGGGCACCCAAGCAGGATGACCCCAGCTGGGCCCAGGAGAGGCCACTGTTGGTGACCTACAGCCACGATGGAAGGGGACAGTCTCTGAAACTCCGACCACCCACTATTACTTCAACAACCCTTGGACGGGAGGGGAGGACGCGTGGGCCGGGCCGGGATTGGAGGTATGGGCGGAGACAGGGGCGGGAGAGGAGGGTAAAGCGTAATGGCAGGAACCACAAGCTGAAGAAGCTGGCCAAGGCGAGATGCAAGAGGCACCCTTTGTACGTGGACTTCAAGGACGTGGGTTGGAACAAGTGGATCGTGGCCCCCAGCGGCTATCATGCATTCTTCTGCCTGGGCGAGTGCCGCTTCCCCCTAACCGACCATATGAACTCATCCAGCCATGCCATGGTGCAGACGCTGGTCAACTCAGTCAATGGCAAGGTGCCCCGGGCCTGCTGCGTACCCACCTCTCTCAGCCCCATCGCCATGCTGTACCTGGACCAGCATGATCGCGTGGTGCTCAAGAACTACCAGGATATGGTTGTGGAGGGCTGTGGCTGCAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55609 lncRNA upstream 82034 32191179 ~ 32191395 (+) True G44613
TU55590 lncRNA upstream 134852 32136230 ~ 32138577 (+) True G44598
TU55582 lncRNA upstream 215803 32053733 ~ 32057626 (+) True G44590
TU55573 lncRNA upstream 242507 32030256 ~ 32030922 (+) True G44581
TU55549 lncRNA upstream 374227 31898621 ~ 31899202 (+) True G44561
TU55623 lncRNA downstream 2087 32286014 ~ 32286159 (+) True G44620
TU55639 lncRNA downstream 112927 32396854 ~ 32398159 (+) False AMCG00013477
TU55727 lncRNA downstream 258708 32542635 ~ 32543676 (+) True G44702
TU55784 lncRNA downstream 371576 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 472811 32756738 ~ 32758380 (+) True G44769
AMCG00013474 mRNA upstream 46872 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013472 mRNA upstream 283253 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013469 mRNA upstream 352054 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013468 mRNA upstream 362258 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013465 mRNA upstream 500236 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013479 mRNA downstream 62211 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013477 mRNA downstream 109891 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013478 mRNA downstream 139835 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013476 mRNA downstream 180169 32464096 ~ 32475750 (+) True AMCG00013476
AMCG00013481 mRNA downstream 206144 32490071 ~ 32494429 (+) True AMCG00013481
TU55551 other upstream 361628 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1496260 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1705210 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1777773 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 2051220 30218910 ~ 30222209 (+) False AMCG00013396
TU55641 other downstream 139349 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 139349 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 822365 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 1092593 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 1158467 33442394 ~ 33446921 (+) False AMCG00013516

Expression Profile