RNA id: AMCG00013474


Basic Information

Item Value
RNA id AMCG00013474
length 387
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00013474
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32226171 ~ 32226557 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGATCCCGGTCTGTGTGTTGAGGCTGCCCCGTGGACCTGAGCCGAACAGCCGCGGATTTGACCCGAATTCCCCGCGCTATCAGGCGCTGTGCCCGGCCACTATATCAGCCTCGACCGGGACCGGAGTGGATCCTGCCGGCTGGCGCAGTGAGCAGTGTGCCCGCTCGCTGCTCCGGGAGCGCTACCTGCGCAGCCTGCTGGCCATGACGGGCAGGGCGGTGCGGTTCACCATGTACGAGCGCGTCTGCGTGGCGGCTACATTCGGGGCCGCAGACATAGACGTGCTCAATTTCCAAGTGACGGATTTGCAGACTCCTCTGGGCGTGCAGAAACAAGCGCTTCTACGTTGTCCCGACGTTATCTCGTactcttttgaaatgtaa

Function

GO:

id name namespace
GO:0032797 SMN complex cellular_component

KEGG:

id description
K13135 GEMIN7, SIP3; gem associated protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55609 lncRNA upstream 34776 32191179 ~ 32191395 (+) True G44613
TU55590 lncRNA upstream 87594 32136230 ~ 32138577 (+) True G44598
TU55582 lncRNA upstream 168545 32053733 ~ 32057626 (+) True G44590
TU55573 lncRNA upstream 195249 32030256 ~ 32030922 (+) True G44581
TU55549 lncRNA upstream 326969 31898621 ~ 31899202 (+) True G44561
TU55621 lncRNA downstream 57057 32283614 ~ 32284951 (+) False AMCG00013473
TU55623 lncRNA downstream 59457 32286014 ~ 32286159 (+) True G44620
TU55639 lncRNA downstream 170297 32396854 ~ 32398159 (+) False AMCG00013477
TU55727 lncRNA downstream 316078 32542635 ~ 32543676 (+) True G44702
TU55784 lncRNA downstream 428946 32655503 ~ 32655702 (+) True G44747
AMCG00013472 mRNA upstream 235995 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013469 mRNA upstream 304796 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013468 mRNA upstream 315000 31901530 ~ 31911171 (+) False AMCG00013468
AMCG00013465 mRNA upstream 452978 31772421 ~ 31773193 (+) True AMCG00013465
AMCG00013462 mRNA upstream 472763 31742807 ~ 31753408 (+) True AMCG00013462
AMCG00013473 mRNA downstream 46872 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013479 mRNA downstream 119581 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013477 mRNA downstream 167261 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013478 mRNA downstream 197205 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013476 mRNA downstream 237539 32464096 ~ 32475750 (+) True AMCG00013476
TU55551 other upstream 314370 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1449002 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1657952 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1730515 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 2003962 30218910 ~ 30222209 (+) False AMCG00013396
TU55622 other downstream 46711 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 196719 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 196719 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 879735 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 1149963 33376520 ~ 33394148 (+) False AMCG00013515

Expression Profile