RNA id: AMCG00013476


Basic Information

Item Value
RNA id AMCG00013476
length 2171
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00013476
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32464096 ~ 32475750 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGAAGAAGCCCTTTATAATAGAGGTAGAGGAGAGAGGATGgatcaaacagaaaacaaaagaagaagtAAAACGCGATTCTCCGCCTCACATGACAGCGATTAGCAGGGAGAGTGAAGCGGGAGGGGAAGCGGCTGGTGAAACTGTTCTCCATTCTGCTACAATCAATTAACTGACAGCGTGCAGTTCTGATGCGCCGGTTCGACGCGCCCCACTTTGCTCAGTTGGATTTGTATGACAGCGGAACCGTCTTCAGAACTAAGAGTGATGGGCAGCCGGAGGGGATGGAACCTCAGACACTGCTGCATGCTGGGCCTGACTGTGCTGGTGTTAGTGGGGGAGCTGGTGGTGAGCCGCGTGTGCAACTCCCTTATCAACATGGTGGACTCCTTCAACACCCTATTTATGCTCTTACACCTGTGCCTCTCCCCCTCAGCTCACAGCCCCCCTGCATCCCCAGACCCCTCCACCTTCAACATCCCCTCCACCCCCTGCCCCTCGCGGCCTTTCGGCTGGGCCAGGCTACGCCCCCTGGGGGCCCTTGTGTCGGCACTgctcctgtcctctctctgcatctctgtctcCCTGGACATCCTCGGGCATATCCTGCGGCCCCACCCCCTGCAGTGGCCCCTATTGGCTGCGGCCGCAGGGGCCACTGGGCTGCTGTTCAATGCCGGGGTTCTATTTGCTTGCTTCGAGGTTGAAGTCCAGACAGAAGAGAGTAGAGtggcagaggaggaagagagtgaAAGCTCGGACAACCTCCCCAGGGGTCCAACAGATGCCCAAGTGCATCTGGCAGAGGACGTGCTTCTGTACTGCAATCCTGGTGCCTCCAGCATCCTTGACCCAGATGCTCACTTAGAGCCCAGCCCCAGCCTTCCCCTAGACTCCCTGCCAGAATTTCACAGCCTGGAGTCCTGGAGGCAGCTGGACATTCACTCTGAGGATTTTGCTCCCCATGGTACACCTGCCAGCCTTCCACACTCAGTCAATAAGGGCATCCTAGAGGCACAGCGCACTTGCACAGATCTTGTACTGAGCAACCCAAACAGTGAGAAGGCCCCTCCTGTGCCCTGCAGCGACCAAACAGATTCTTCAGTACCCAAAGAGTACTACAGAGAGCCAGTGGTGGAGCCAGCCTCCAGAAGGCGAGGGTGGCAGTGTGGGCTACCTGCTCTCCTGCGTGTGGCCCAGAGCCTGCTGGCATCGGCACTGGTGCTAGCCAATGGCCTAGCCCAGTTGGTGCTGGGCCCAGAATGCCCTGCGGGGGAGAGGGGCTGCGACCTGTATGTCTATCTAGACCCAGCCTTCTCCCTGCTGGCCGTTGTGGTCCTGCTTGCGGCCACTCTGCCTCAAGTTAAACGTTACGGATTCCTGCTGCTCCAAGGAGTGCCCACCCATATCGCCCTGGACAACCTGGTCGCTAGGATCGGGCAGCTCCCTGGGGTGCTGTCCATTCACGAGCTGCATGTGTGGCAGCTGTCAGAGAAATTCCTGGTGGCTTCAGTTCACGTGCACTGTGACCAGCTTGACGGGCACCAGAGCCTGTTGGCAGCCATCACCGAGATCTTCCAGAGCGTGGGCGTGAGCTGCTCCACTGTGCAGCCTGAATTCCACCCCCTTCCCACCCCCCAAAGCACAGACCCATTGCCCCTACCCCAATGCAGTCTGGCATGTAGGAAGGAGTGTGCCAAGAAGCTATGCTGCCAGGGAGGCCAACAGCATCCCCCAGTGCCTCCTCATCCTGGACAGCTCCAGAATCACTTCCCTGAGCTAGTTATTGAGAACACCTACCTTTGATGTGGCTGGGGAACAGGGGTGGAGGAGGATTTTGCAGAGCCCAGTGCAAGCCCAACTCAAGCCTTCGGACACATAGACATCCTGAAACTCTTTAACCAGTCTATCactcatttagttttttaaatagagGTATTTACATAATATCATCTTAGAGCAGCTGAAATCTACAGTGTCTTAAGTCTGATCTACTTCAGGAAATAGCAGTCAAAGGGTTGAGGCTGGGGAAGAAATGTGAATGCAGAAATTAAGGGAGTTAGTTTTAGTGTCTGACTTATCAGTAGATCACTTTGGCCCCTGACTATCTCGTATTAGCGCTGACACAttctatatacagttaggtccataaatatttggacagtgacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55639 lncRNA upstream 65937 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 177937 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 179145 32283614 ~ 32284951 (+) False AMCG00013473
TU55609 lncRNA upstream 272701 32191179 ~ 32191395 (+) True G44613
TU55590 lncRNA upstream 325519 32136230 ~ 32138577 (+) True G44598
TU55727 lncRNA downstream 66885 32542635 ~ 32543676 (+) True G44702
TU55784 lncRNA downstream 179753 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 280988 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 361565 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 607978 33083728 ~ 33088760 (+) True G44860
AMCG00013478 mRNA upstream 8410 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013477 mRNA upstream 63644 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013479 mRNA upstream 74134 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013473 mRNA upstream 180169 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013474 mRNA upstream 237539 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013481 mRNA downstream 14321 32490071 ~ 32494429 (+) True AMCG00013481
AMCG00013485 mRNA downstream 113978 32589728 ~ 32599218 (+) True AMCG00013485
AMCG00013487 mRNA downstream 128985 32604735 ~ 32608797 (+) True AMCG00013487
AMCG00013486 mRNA downstream 153177 32628927 ~ 32636264 (+) True AMCG00013486
AMCG00013490 mRNA downstream 166695 32642445 ~ 32656154 (+) True AMCG00013490
TU55641 other upstream 34209 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 34209 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 180597 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 552295 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1686927 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 630542 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 900770 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 966644 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 1219842 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1638923 34114673 ~ 34114939 (+) True G45072

Expression Profile