RNA id: TU55639



Basic Information


Item Value
RNA id TU55639
length 1039
lncRNA type sense_over
GC content 0.53
exon number 2
gene id AMCG00013477
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32393818 ~ 32400452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGTGAAGTGGAAggggaggacagagagaaagagggaggcaGCTACAGTGAAGAAGGCGGGGAGGAGACTAGGACAAGGGGAGAAATTGATGGTGGATCCGCAACAGACTGCTCCCACACCAATCAGGAATCTGATTCAGACacggaggaggaagaggaggaggaggatgaggaaggCCAAGAAGCAGCCACAGCAGAGCAATCAACCCGCGAAGTGCCTCCTGCCCAAATCAGCCCTCTGATCTCAGCCACGCCCCCCGTGGACAGGGCCAGCTCCCCACTGCCAGGCCACCCACAAACAGGGGCAGGGACAGAGGTGGCAGTTACTCTCACCCAGTCAGCATCCCCTGCTTCCCCACACACCCCCACATTGCCCGGCAATGAGCGTTGCATCTCAGTATCCAGTCCGGGACGGGGACACAAAATCTTTGTGGTGACACGAGTGGAGAGCCCTCCAGAGCAGCTGCAGCTGCCTCctactctccttcctcctcaaGTGAAGAATGCGCCCCCTTTGCCCAATCCCCCAACTCCAGTCACAGACCTAGGGCAGCTGCCTCCCCTGGACACATCAGCCGGCCCTGTGCCCGTAGCTGTGACCAGTCGAGACACCCCCAACACAGACGAGTGCTTGCTGATCACCACGGGCTCTCTGCCAAACGGACTCAAGCCAGAATTCGCCTGCATCCTGCCAGACCTAAGTGAGCCCCCGACCCCCAAAGTGACAAGCTGTTCGGCAGAACATGAGCTGAAATGTGACAAGGAGCTAGAAGAGTTGCTACTGGAGGCCAGCCTGGAGACTGTGAGAGAAGCACCATGACACTGCTGGTAAACTTAATCACACActcaataaattattattattagtagtagtagtaatatttatatattattatattgtgcTCTGTTAACTGCACTTTCCATGCAATAATGTCCAGAGGGATTTGGTTGAAGAATTCTCTCCAGTGAGCTAGATAAATGCATCCATTTTCAAGTTAAACcttatttttcttcctgcagaaaacaaacataagtCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55623 lncRNA upstream 110695 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 111903 32283614 ~ 32284951 (+) False AMCG00013473
TU55609 lncRNA upstream 205459 32191179 ~ 32191395 (+) True G44613
TU55590 lncRNA upstream 258277 32136230 ~ 32138577 (+) True G44598
TU55582 lncRNA upstream 339228 32053733 ~ 32057626 (+) True G44590
TU55727 lncRNA downstream 144476 32542635 ~ 32543676 (+) True G44702
TU55784 lncRNA downstream 257344 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 358579 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 439156 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 685569 33083728 ~ 33088760 (+) True G44860
AMCG00013479 mRNA upstream 6892 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013473 mRNA upstream 112927 32273429 ~ 32283927 (+) True AMCG00013473
AMCG00013474 mRNA upstream 170297 32226171 ~ 32226557 (+) True AMCG00013474
AMCG00013472 mRNA upstream 406678 31988690 ~ 31990176 (+) True AMCG00013472
AMCG00013469 mRNA upstream 475479 31915101 ~ 31921375 (+) True AMCG00013469
AMCG00013478 mRNA downstream 25603 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013476 mRNA downstream 65937 32464096 ~ 32475750 (+) True AMCG00013476
AMCG00013481 mRNA downstream 91912 32490071 ~ 32494429 (+) True AMCG00013481
AMCG00013485 mRNA downstream 191569 32589728 ~ 32599218 (+) True AMCG00013485
AMCG00013487 mRNA downstream 206576 32604735 ~ 32608797 (+) True AMCG00013487
TU55622 other upstream 113355 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 485053 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1619685 30776851 ~ 30777169 (+) True G44325
TU55111 other upstream 1828635 30563368 ~ 30568219 (+) True AMCG00013417
TU55098 other upstream 1901198 30490827 ~ 30495656 (+) True AMCG00013416
TU55641 other downstream 25117 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 25117 32423276 ~ 32429887 (+) True AMCG00013478
TU55933 other downstream 708133 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 978361 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 1044235 33442394 ~ 33446921 (+) False AMCG00013516

Expression Profile