RNA id: AMCG00013485


Basic Information

Item Value
RNA id AMCG00013485
length 6705
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00013485
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32589728 ~ 32599218 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTCCTTCTCTTTGGAGGCTGGAGTCCAGACGGAGAGTCCCTCTGAAGTCTCCGTCGGGGACTCTGCGAGCCTGAAAGAGGAGGCGGTTGCGCTGGACGAAGTCTCCGAGCAGCTCCTGCAAACTTTCCAGAGCTCCGCGTTGAGTTTCTCGGCGGATCAGGTTGCGTGTTTGTGCGAGGCGCTCCTGCAGGCAGGCAATGTGGAGAGACTGGGCAGATTCCTCTCCACCATCCCTCCGTCGGCTGAGCTGCTACGTGGCAACGAGACCCTGCTGAAGGCCAAGGCACTGGAGAGGTCGAGGAACGCGCTGAAGGAGTGCTACAAGAGCAACAGGTACCCCACTCCGGACGAGAAGCGCAACCTGGCCAAAGTCACCGGCCTGTCTCTGACCCAGGTGAGCAACTGGTTCAAGAATCGACGGCAGCGAGACCGCACTCCTTCGGGGACTAACAGCAAGAGCGAATCAGATGGCAATCATAGCACGGAGGACGAGGCGAGCCGGGGAATGGAGGATGTGGTCATGACGCCTGCTGCTCAGGAGGAGCTGAGCCCGGCGCCAGTGCTGCTGTCTGCGGGCAGCTCCTGCAGCACTGGTGGGCCCCTCCTCCTCAATGGCAGCTTGTTGACCACCAGTGGCCAAGCGCCGCTGCTGCTGAATGGCGGTTCTTTGCTCCAGGGCCCGGGCGGTGGTGTCATTATCAATGGGCTGACCCTGAGCGATGGCCAGACCATCACACTCAGTCCTGTCGCAGGCAACACCCCCCTGGTGCTCAACGGCACACAGGTTGTGTCCAAGCAGCCAGCTGCGCCCCTCACAGAATCGGGGTTGAAGGAGCAGGTGGTGGCGGGGGTGCCCACCATAGTGCTGAACACCAGTGGCCCCACACTCTCCCTGCCGCCCTCCGACGATGGCCTGGGGAAGTCGGTGGACGATGGGGTGGCCCTGCACTCCGTACTGCCCTCCATGGATTTTGTCAACTCCCTAACTGTCCAGAACAGCACCGCTGTCAAGACGGTGGTCTCCCAGCCAGgtgtctcctcctcctcttcctccccctccagCACTCTGCCTTCCCTGGTCTTTACAGGCTGCACCCAGAGTGCTGTGTCAGAGGCCAAGCTCGTCGAAACCCAGATGGCACCCTCTGTCTCCCTGGCACAGCCCGGCCTCATGCAGACCAGCCAGGTGGTGCCGTTGTTGCCACAGCAGCAGGAAATTACCTCCGTGTTGCCCCAGCTGGTCCAGGACAACCATGTCACCTCAGGCCCTCAAGTCCTGTCCCTCCCTCAGGTGGTGCCTTCCATCCAGGGCATCCCCGTGTCTCAGTTCGTCCAGGCCCACTCCACCCAGGTGACCTCTTGCCCCCAGATCGTGCCCCTCTCCTCCATGGCTCCCCACTTCTCTCAAGCCTCCATCTCGCACCTCTCCACTCAGAGCTTCCAGATCACCTCCGCTAGACTCCCCCAGCAGCCACAGCAGCTCGCCACTGTCACAACATCCCTGCCCCAGGTCACCCATCTGGGGAACTCCCAGCCTCAGCAGCAGTCAGCCCTGCCTCTCCAGCTGACTGAGCACCCCTCCCCTGCCCCGACTGTCCAGACACTCCAGACACTGACCCAGGCGCCTACACTGCAGGTTTCAGGAGCTCAGATCATCCCCATCTCCCCGCCCACCCAGGTGGTGCCCATCTCCCAGTCGGGCCAGGTCTCGGTGGCCGCCCCTCCCACCCAGATCGTCCCTCTGTCCTTGCCCCAGCTGGTGCCTGTGTCCTCTGCAGTAACCTCACAGTGCCCACTGTCCCTGCCTCAAGTAGTGCCAGGCTCCCCGGCtatgtctctctcctctccggGGACATTCCAGATCCTCACCAGTTCCAGCAATGCCAGCTGCACCCCGGGCCCCTTCAAAGTCAACCAACTGGGCACCATCCAGATCCCTAGCAACCCGAGCATAGGCACAGTGGGCAGTGGTGCCACAGGGGTGCAGTTCCTCAACTCCGGCATCTTTCAGCTTCCTACAGCATCGCAAGGTAACATCCTCCTGACCAATCCTGCAGGGGGCAATACCATCCTGACAGGGTTGACCTTCCAGCAGGGCAAGCTAATCTTGACCGCCACCTTCCCTGCTAGCATGCAGTTAGCCAGCCTGCCTCTGAAGCCTGATGGCGAGAGCGCTCCCAGCAATGGGGGCATCGTCCTGACACCCGTCATCTCCATggctggtggggggggaggcGGCCAGCAGGGAGCGGTGCCCCTCTCCACCTTTGCCACCACTTCCCAGACCTCAGCCtgctcctcctcatcctccttccAGAATGATTCCTCCTTGACCTTTGTGAATGTAGCTGGCCTCTACCAGAACCCCCACTCGGCGGTCCCCGGGCCCACCCTGCACTCCCCCCCAGCCGCTACCCTGGCTACTCTGGATGCCGGGGGCAGCCTCCCCTCCCCCGTGACCCAAACAGGTCTCAGTCCCAATCTGGGGGATGCCCATCTCTCCCTGGCCTCCCCCATCTCCAGCCAGGCGGTCACCAGCGCCCAGTTGTCCCATTCTGTGTGGAGCTCTGTGTCTAGTCTGGCGGGCGGCTCTTCGGGGCTTACACCAGGCCTATTCAACGTCAGGAAAGGAGAGCTGTCTGAGGATGATGGCCACCAGGGACTGTTGGGCTTGGCCAGTGGGGAAGCGCTCCTCCTGAACACCCCTTCGCCTGAGCAGGATGGGGGTGGCTCACCGCTGGACGACTCCGAAGAGATGGACGGGGACCCCAAAATCCTAACGCAGCTGCAGTCCGTCCCCGTTGATGACGACCTCGGCCTGTGAACCGATGGGCCGACAATCCCACAGCTCAGTGTGTCCTGCACATGATTGTCCCTCCAGGGCCCAGGAAGAGGATGGGCTCTAGCTGATTAAAAAGGAACTTCTCAAGCAGCTTCTCAAGGTCTTCACAGCAGACGCCACTTCTATAAGCAGTCAACTTGGGAATATAAGTTGCTATGAAATGAGTGCCCCcctgttttctattttttattgatttacaatAATTGAGGGCAGGTGTAGTTATGATATTGAACTGACCAACAAAGAGTAGTGGGACTTCTTTTGAGAAAGAAGGGTCAAGTGGCAGGCAGTACCTCATTACAATGTTACCATATTTGTTCACTAATAAGGTGGTGGAGAaggtattttttatgtttttattataaaactacagaaaatgaaatgggcATTTACGCTTCAGAACGTCAGACTGGAGAGCTGGAATTGAGGCCATGATTTTGGAATTGCTCTGCTTCCCTCTTCTACATTCACAGTCCAGATGGTCAgagtagttttttttattttttttattcttccaagCATTAATCATTGGAATAATGCAAATTTTAAACTTTTGTAACTCTTAAGATGGCAGCACTACAAAGTTTAATATCCTTTCTTAGCTATGATCATGAAGCAACTGGGAAACTTTCACGAGTCCAGAAGAAAGATGAGGTTAAATAAGCTACCGTTTGTCATTTGCTTGTTTAACACCCACTAGCTAATCAAAgcctaaaatgtaaaatcctcGTGAAGAATTCCAGAGAATTCAACACCACCACCTAGCTGGTTTGATCCAGGACTTGTTTGGGGGGGAAGGAAAAGTcagcagaaatgtttttatttatgcatcatTACAAGTAGTGTGCAGTCTAGTGAAAAGAATCGCTACAATACTAGGAATACattagtgttttcttttgttaatgAGGTTTTCAAGAAATAAGGTTCAGTTGTCCTTGAAGTGAAGTGCAAAGTCACCCCTAATCACCATCTCGTGGCTATTGGAATACACAGGGAGACCAGCTTGAAGAacgctacactacactacactacgctacacacacagctgcaggaCTCCTTACATGTTTCCTTCAAACTCCAGTGGTCGTGTAGCTAACAGATGTCCATATAAAAGTAATTCCTGAGGCTGGAATCTCGGGCATCACCAAAGCAAAACTGTCTGTGAAACgatacaaaaaaaacctgacagTCACTTGCCTTCTTCTCAACTAATTTTTCCAGTGCATTTTTTCAGGACTGTGCACTCGGACACAACTAATACTAACCCCTGCCATAACTGGTTTGGTTGCAGACGGAACAGTGGCAGGTGTGGATTCACATCACATCGGAAAAAGAGCTGTGGCACAAATACAAACTGACAAATATATGTGCAGTGATCTAACCCATGTCACATTTGACTGTTTTGAGAATGAGTAACTGACATGTTTGCCAAAGTGCAGCAAACCATTGTTTTTAACTGATCTTCTTTTTTCATCCAAAAACTGTCCTAGGTGCACTACATAGACTACACCTGCAGCATATCACTGTCACACTCCAGCTGATTTAGTTAGGATATTAGGTGCAATGGACTGGTCCCGCTCTGTGAAGTCTATGTGGTAGTTGGAAGGATCAGGGATGGAGCCtagcttttgtttctgttttgtgctGTTACACTTTGTGAGATGAGGGTAGGTCTTTTGAACTGAAGTCAAAGAGAATCGCACCTCTTTCCTGCAGcttctgattttatttcaaagctTAATCTGTGTTCAGGGATCCTGGTACGAGGAAATTACTTTCAAACACCCTGCTGTTATACATGCAGGGATGTGTTGAATATGCCGACATcatcatttagtttaattattttgcagtgaGTGTATTACAATCGGTAATCGGTAGGTTGAGAACTGAGTTGGAAGCTTCAGTGGCACTGGAAGGCAGGCCAACAGCTGTGTTTTGCTTACCTGCATCATGGCTTCACTTTATTGTATATGTGGCATTTGATGATATGAAAAAAATAGGGAGAACCAAAAGCATAGGATGGCATTGACTGGGCAGTTCAAACGGCTTGTACATTCAACACTTGGTAATGACCATATTGCATGGTAAGTTACAGGATTTTAATCCCTTCCCAAGAGGTGCACATAAGGCTGTGGCCAACAGAGCACGAACCTTTATCCAGATATCTCAGTCTTGGTAAACCCCTACACTATACCCCGCCTCCCGATAAAACTGTCTATCTTTTTCTGTGATGGAATTGCACAAGTAAACTCAAGATACTTGCTTCCACATAATTGGTTGCTATTTTCCGAATTGCTGCTTTCTGTCCTGTCCCCCCTTCTCGCATCATTTATTTCCACCCTCAAACTGTGGATTTCAAACTGGTCAGGTCAGCGGAACATCCGGTTAATCCGATTTACATATGGTCTGATGTCATCAAAACCTGACCGCACCTGCTCTCATGGGGCTAGCGGGCCACGCTCCAGTGTGAAACACTACATGTTAATAGAAGCCTTTTTTTCTATGCAAGCAAACATTTCCATTTagaatttttttgtatttttattatatatatatataaaataagcaataatagcaatactgttttttatgttatgttttgtttcctttgtacatgaaatatgtttgtaaatACTAGTGTCTTTAGCCTCAGAATGGAATTATGGGAAATTGTTACAGGGAGATGGGTGTTGGAATGTTAGTGGGGAGAGACACAGGAGTTTTTTGTATCCAAAATTACAGTTCGGCTTTGGTAAAGACTTGGGTTTATAACGTATAAGCTCAGGACAAGCGGAATCTTGCTACACTGAGAAATACTGGAGACTGAGGCCTATTCCCCTGAGTTCCCCTTATACCTCTTTATGAATTGTTAATTTTCCATCAGCCTATGTACTTGTAAAGGAGGCCTGTAGTCTGGTCAGGTGGCATAAAAAATTGATCACAATAGGGTGACTTTCCTTACCTGTCCAGTAAAGGATGTTTACATACATCATAACTCAAAAGGAAATGTCAGGAGTAAAGACTAATCTCTTTACTAATCTACAACCAGTAAAACCCATACAATTTCCCCATTGGACAGCAAACGCAATCTGTTTGAACCAAATCTATTTGTCCATTCTCCTCAACAGCCCTCTATTCCTAGCATTCCTGTACATCTCAAGTTATTTCTAATGGCCAACAGGCACAATCCAGAGCAATTCATATGTCTGCTGTTTGTTATCTAATTGAGTTAGCACTATATCACCTTTATATCTCCTGGCACAGAGGAAGCCAGTACAGAGATTAAATAACCATGTTTGCTGAGGGGACAATGTGTCTCTATAGGAATTTACAACACCACGCAAAAATCttgaatttctttttttatatatatatatatatataattttgtgtgtgtgcacatttcCAGGTTGTGAATTTGCCTTGTTATAAAAGCATAGACCAGCACACCCTGAGGGAATTCTTCCTCCGCATACAGTGATGCCTTGGCTAATCCTGTGTGTTTTAGGTCAGCCACTGCATGTTTGAAAGCATCCTCTGCAACTTTCAGGCCAGTCCAATACAGCTGTTCTGTTCACACTTGCCCAAAAAGGATTTTCTCAGGCCTGATTCTGTTCCCTTTAGTTTTTCAGCAGGCATCAGGTATTTTAGGTATTTTCTAATTGGAATTAAAGCAGGAGAACAGGAAGCCAAAGGAAAATTGAAGGGATGCCTTGCCGGTGGCAGAGCAGTCCTGGCATGCTTTGGAAACCGCTCTGACTTTAATTCCAATTGGAAAGTAAGTTAATCCCTAAGGGATCACTTCACAACCCCATCCACATAGTAGAAATTCACTCTTTATGTATAAAtctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55727 lncRNA upstream 46052 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 191569 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 303569 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 304777 32283614 ~ 32284951 (+) False AMCG00013473
TU55609 lncRNA upstream 398333 32191179 ~ 32191395 (+) True G44613
TU55784 lncRNA downstream 56285 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 157520 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 238097 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 484510 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 489598 33088816 ~ 33090427 (+) True G44861
AMCG00013481 mRNA upstream 95299 32490071 ~ 32494429 (+) True AMCG00013481
AMCG00013476 mRNA upstream 113978 32464096 ~ 32475750 (+) True AMCG00013476
AMCG00013478 mRNA upstream 134042 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013477 mRNA upstream 189276 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013479 mRNA upstream 199766 32346138 ~ 32389962 (+) True AMCG00013479
AMCG00013487 mRNA downstream 5517 32604735 ~ 32608797 (+) True AMCG00013487
AMCG00013486 mRNA downstream 29709 32628927 ~ 32636264 (+) True AMCG00013486
AMCG00013490 mRNA downstream 43227 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013491 mRNA downstream 93956 32693174 ~ 32711904 (+) True AMCG00013491
AMCG00013492 mRNA downstream 115206 32714424 ~ 32724784 (+) True AMCG00013492
TU55641 other upstream 159841 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 159841 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 306229 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 677927 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1812559 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 507074 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 777302 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 843176 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 1096374 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1515455 34114673 ~ 34114939 (+) True G45072

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026670 True 2454 mRNA 0.50 3 NC_007129.7 37245331 ~ 37252036 (-)