RNA id: AMCG00013486


Basic Information

Item Value
RNA id AMCG00013486
length 1539
RNA type mRNA
GC content 0.63
exon number 12
gene id AMCG00013486
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32628927 ~ 32636264 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCCAGTAGTTGTTTTCCTCACAGCGTCGGGCGATTTCACATTCCTCTGGGACAGTGGGTGCCGCCACAGGCTCACGGTCTCCCCCCAGCGGCCGGAGCTCGGCATGGCCGCGGACATGGCTCCCGGGGCTGCGAGCAGATCGGCCGCAGTGTCACACAAGAGCAGCAAGGAGCAGAGGGATTTCAGTGCCAGCCTTAGAGACATCGCCACCCTGCTGCCCGTCCCTGAGCCCAGCAGCACCCGCCTCCTCACCAAGAAAGAGACGTTGCTCCACATGCTGAGGTACCTGGACTTCCTGAAGAAGCACATCCAGACCCAGCAGAGCCTCCTGCCCACACACAGCCTGCCCTCCACAGGATGCGACAACCATGACGACCTTACCTCACCCCCGCACTCTGAACCACGCACCCCCCCAAGCTGCCTGAAGGCCAAACGCAAGAGTGTCTGTGGCCGCCCCCGCAAGAGGCCCCCCCACAGCACCGAGCCGTGGGTGGACATGAAGGACAAGAGGCGGAGACTGTTTGGGGTGGAGTCTGAAGAAGACAATATCCAGCCCAGCGTGGGGGCGGAGTCACTGGCCGAGTGGGGTGGAAGTGCTGATTGGCCCCCAGTGTCGCAGTCTGGCAGGAAGCAGGTGTGTCCTGTGCAGGACGGTGACACCTCCCTGTCCAGCTCCCTGGACTCTGAGCTGAGTCTCAGTCAGCTGTCCAGGTCGACTGATGAATCCCCACTTGGCCAGGAGCCCAGAACCCCAGGAGAGGACAGCCGATGTTctgcctgtgaggagagaacAGGCAGTGAGGAGGGCAGCCCTAGCAGTGGGGTCCTGGACTCCCCACAGCCCTCGTCTTGGGCTTGCCTTCTAAAAGATCACATGCTGGGGGGGTACTTCTCTTCGGATGAAGATGACCTCCTGGGATCCCCCCTTGACCAAACCCCAATGTTCCCCCTACACTGCCTCTCCCCGCCTTGCAGGGGGCTCAGGACTCTGGGGTTTCGGGACAGTCTGAACCTCAGCCCCTCCCTGCTCACCTCCCCAGCACGGGACATCCCCGTCAGCCTACTGCCTGAGGGACACGAGGAGCTGCAGGCCCTGTTTGAAGACGTGTGGGTCAGCCCCAACCCAACTGCCTCCAAGCCTCCAAGCCTGCCCTCCGGCCCCATCCCTGACTCGCTGCAGGAGTGTGACGGTGTGGCCGGGAGCAGCTGGCTGTCTTCCCAGagtgagggggaggaggggggcgACTTCACCTGGACCCCCACCCAGCGGGGCCCTGCGAGGGGCAGCAGGGGCCGACGCAGACAGCGGGCCACCAAAGGACATCTGCCCAGCCTGAAAAAGAAGTGTGTCAATGGATTTATCATGTTCTGCAGGCTCAACAGGAAGACCTACTTGCACTCTCACCCGGGCACCCCCTCCACTGTGGTCACCAAGGAGCTGGCCAGGCTCCCTCTGCACATGTTGCTGGCATGTAGACAGCTGTGCCTGGAGGTGGCGGGGCGGACGGAGCCTAAAGAGCCCACACAGGACTGA

Function

GO: NA

KEGG:

id description
ko05412 Arrhythmogenic right ventricular cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55727 lncRNA upstream 85251 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 230768 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 342768 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 343976 32283614 ~ 32284951 (+) False AMCG00013473
TU55609 lncRNA upstream 437532 32191179 ~ 32191395 (+) True G44613
TU55784 lncRNA downstream 19239 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 120474 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 201051 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 447464 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 452552 33088816 ~ 33090427 (+) True G44861
AMCG00013487 mRNA upstream 20130 32604735 ~ 32608797 (+) True AMCG00013487
AMCG00013485 mRNA upstream 29709 32589728 ~ 32599218 (+) True AMCG00013485
AMCG00013481 mRNA upstream 134498 32490071 ~ 32494429 (+) True AMCG00013481
AMCG00013476 mRNA upstream 153177 32464096 ~ 32475750 (+) True AMCG00013476
AMCG00013478 mRNA upstream 173241 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013490 mRNA downstream 6181 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013491 mRNA downstream 56910 32693174 ~ 32711904 (+) True AMCG00013491
AMCG00013492 mRNA downstream 78160 32714424 ~ 32724784 (+) True AMCG00013492
AMCG00013493 mRNA downstream 116508 32752772 ~ 32756003 (+) True AMCG00013493
AMCG00013495 mRNA downstream 165985 32802249 ~ 32829019 (+) True AMCG00013495
TU55641 other upstream 199040 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 199040 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 345428 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 717126 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1851758 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 470028 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 740256 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 806130 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 1059328 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1478409 34114673 ~ 34114939 (+) True G45072

Expression Profile