RNA id: AMCG00013487


Basic Information

Item Value
RNA id AMCG00013487
length 675
RNA type mRNA
GC content 0.66
exon number 3
gene id AMCG00013487
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32604735 ~ 32608797 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTTTGGCTTCTCGCAGGACCAGGTGGCCTGTGTGTGCGAGGTACTGCTGCAAGGGGGCAACGTTGAGCGCCTCGGCCGCTTCCTGTGGTCCCTGCCACCCTGCGACCTCCTGCACAAGAACGAGAGCGTGCTGAAGGCCAAGGCCGTGGTGGCATTTCACCGGGGAAGCTTCCGTGAGCTCTACCAGCTGCTGGAGAGCCAACCCTTCTCCCCCCGCAACCACAGCTACCTGCAGCAGCTGTGGCTGCGTGCGCACTACCTGGAGGCCGAGAGGCTGCGGGGGCGCCCTCTGGGGGCCGTGGGCAAATACCGCgAGAAATCCCGGGGTGTGCTGAGGGAGTGGTACCTGCACAAGCCCTACCCCTCCCCACGGGACAAGCGTGAGCTGGCTGAGGCCACAGGGCTGACCACCACACAGGTCAGCAATTGGTTCAAGAATCGCCGGCAGAGAGACCGTGCCAACGACTGCAAGGACAGCCAGCTGCACGAGCATCGCTTCAGGCCCCCCAGAGGCCCAGGGCCAGGGTACCCCAGCTCAGACGAGGACGAGTCCCCCCCTGGGAGTCCCCGCCTGCTGTACCCCAGCCTGGCCCCCCCTGCCATCCGCCACCACTGCCTTTCCCCCATGGCCATGCTGGGGGCGGACCTACGAGACTTGGGGGGGTCTTGA

Function

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0043282 pharyngeal muscle development biological_process
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002074 extraocular skeletal muscle development biological_process
GO:0048839 inner ear development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55727 lncRNA upstream 61059 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 206576 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 318576 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 319784 32283614 ~ 32284951 (+) False AMCG00013473
TU55609 lncRNA upstream 413340 32191179 ~ 32191395 (+) True G44613
TU55784 lncRNA downstream 46706 32655503 ~ 32655702 (+) True G44747
TU55810 lncRNA downstream 147941 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 228518 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 474931 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 480019 33088816 ~ 33090427 (+) True G44861
AMCG00013485 mRNA upstream 5517 32589728 ~ 32599218 (+) True AMCG00013485
AMCG00013481 mRNA upstream 110306 32490071 ~ 32494429 (+) True AMCG00013481
AMCG00013476 mRNA upstream 128985 32464096 ~ 32475750 (+) True AMCG00013476
AMCG00013478 mRNA upstream 149049 32423762 ~ 32455686 (+) False AMCG00013478
AMCG00013477 mRNA upstream 204283 32393818 ~ 32400452 (+) True AMCG00013477
AMCG00013486 mRNA downstream 20130 32628927 ~ 32636264 (+) True AMCG00013486
AMCG00013490 mRNA downstream 33648 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013491 mRNA downstream 84377 32693174 ~ 32711904 (+) True AMCG00013491
AMCG00013492 mRNA downstream 105627 32714424 ~ 32724784 (+) True AMCG00013492
AMCG00013493 mRNA downstream 143975 32752772 ~ 32756003 (+) True AMCG00013493
TU55641 other upstream 174848 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 174848 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 321236 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 692934 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1827566 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 497495 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 767723 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 833597 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 1086795 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1505876 34114673 ~ 34114939 (+) True G45072

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_01355950_01357775.mRNA True 2744 mRNA 0.45 3 CI01000325 1354202 ~ 1357862 (+)