RNA id: AMCG00013491


Basic Information

Item Value
RNA id AMCG00013491
length 5887
RNA type mRNA
GC content 0.41
exon number 8
gene id AMCG00013491
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32693174 ~ 32711904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGATGAAGTAGCGCACACAGTGACCGAGAGCAGAGTGCTACAGAACACAAGACATCCCTTTCTTACTACACTAAAATATGCTTTCCAGACCCACGACAGGCTGTGCTTTGTCATGGAATATGCCAATGGAGGAGAGCTGTTCTTCCATCTGTCACGTGACCGGGTGTTTACGGAAGACCGTGCACGCTTCTACGGTGCTGAAATAGTGTCTGCTTTGGAGTACCTGCACTCCAGAAATGTTGTGTACAGAGACCTTAAGCTGGAGAACCTCATGTTGGACAAGGATGGCCACATCAAGATAACTGATTTCGGGCTGTGCAAAGAGGGCATCACGGACGGAGCCACCATGAAAACGTTTTGCGGCACCCCGGAGTACCTGGCACCTGAGGTGCTGGAGGACAATGACTATGGACGAGCGGTAGACTGGTGGGGGCTGGGAGTGGTAATGTACGAAATGATGTGTGGACGGCTGCCCTTCTACAACCAGGACCATGAGCGGCTGTTTGAGCTCATCCTCATGGAGGAAATCCGCTTCCCCAGGAACCTCTCCCCCGAGGCCAAGGCACTGCTAGCCGGGCTACTCAAGAAAGACCCCAAACAGAGgttGGGAGGAGGACCTGAGGATGCAAAGGAAGTGATGAGTCACAAGTTCTTCGTCCCTATTAACTGGCAGGATGTCCTGCAGAAGAAGCTCGTGCCCCCCTTCAAGCCTCAGGTGACGTCAGAGACGGACACCCGATATTTTGATGATGAGTTCACAGCCCAGACCATCACAGTCACGCCCCCAGATAAGTATGATAGTCTAGATTCAGAAGACCCAACTCAGCGCACGCACTTCCCTCAATTCTCCTACTCAGCCAGTATACGAGAGTAAGGTGGGAGGGCCGGCTGGCCGGAGAGCATCGAGAGGCTCCAAGCACCAACATGGGCGTGGGCCCCCAACACCCAGAGACTGACAGACACGCTCCCGGCACAACCCCATAGCCCTGCCTTAACGGGGTACTACACTAAAGATAGACATGCATTGCATTGTCAAAGCTCTCAAGAGGAATAACGACGCATGTAAAACACAATTCATACACATTTAGACAAACGCACCTACAGATATCCCATAGACTGCAGGATGAAATACCCTACCTGGAGAGaaaaacttaaaagaaaaaatggagagaaaaaaaaagaaacaaaaaaaaactttaaaaacaaaacttaaaaaaaaaaaaaaaaaaaaaaatacccccaaaaaacctaaagacaaaaaaaatatttttaaaacatttctgataCAGTTTTAAAAGCCATATTCTGCGATTTACAAGTGCTCTTTTGGAACCAGCTGTTACCAATAGTATTTAACTGTTCCTACTGGGCCAGCCAGAAGGGTCACCAAGAGGTCAACAGTGTATCAGTTGCCATTTTCACCCTACACGTGGGCACccttgtgtggttgtgtgttcaATTTGATACATGTTCAGACAcgctgttttgattttaaaggaGGAAAAGAGAACGCAAGATCTTGGCAACGGTATGCACAAGTGTGTTCCTAAACTTTGTTTCCATGCATCAGTTTGACTGAGTTTTAAATCCACAGCCCTTTCATCCTCCATTTAGCCCCAGCGTTACAGGAGAGAAAGAAGTCTGGACTATGAATTGAAGATGGGAGTGGGGACAAGGACAGATGGGAACAGTGACTGGTAGAGAGACTGGGACAGAGACAGTGACTGGTAGACACAAGGACAATGGCTGGTAGAGActgggacagggacagagattTCACTACTTGAGCTGCACTGAAGTTTGCCTCAAATGCAAGTGGGGCCACTAATGTGATTTTTGAGATGTGCAACCAAACAACGGGGttgggtggtggggggcagaAAAGACACccggaaaaactaaaaaataaaagtttgccATCTGCTGACACTCAAACATGGAacagatgaaaatgtttttccattttttgaTATCCATATTATACATTGGCCCCTTTGAGAATGCTCCTTAGGACCTTACAAATATCGGACAGATCCAGACTGACACAGAAATAGGCTGTGGAAACAAACTTATGTCACAATACTATAGTGAAGGTAATCTGGCAGATCTCAGAGGGGAACGAGGCATTCAGATTTTTACTTCAAAGCATCAAGTTTATGATGGTCTGTTCTTGCCTCCTCCCTGCAGAACCAAGACTTCAACCTTTGTATATACCATTTTGAAGTAGGCACAAGTATCCAAACATGGCTGGGTTATGTTTTGCCTTTGACACAGGTTTACTCTCAAGTTACTGGACTGTGTGGTTCCTATGTCAAGCGATGCAGACATTATGACAAAAAGTGTGAGCTGCTAAGAAACGTGGCTTGCATTGGAGCAACTGAAGAGGCAGCCCCTTCTAGATATATTgcattcattgttattattcaagTTTCAGATGGATGTCTGATTTTGAAAAtagtaaaactttatttttcaaacaatgcttttttttgtcttctagACAttaatggtttttttttttttttaatctctgcctctctctttaTCTCCATAGGCTTGTACACTTTGTTCTAGCCCACacaataaacttttttttttttttcctactttGTGAAGCATTGGGATGATTTTGTGAAGCCtgcctgctgtgtttttaaatagcaGGGTTGTCTAATTTGTCACCAACAAGAGACCTGACTGCAAAGGCTCCTGGGAGGGATTTTAATTAGACCCAGACTGGGACTGGCCAGTCATTAGTTTTGATACCCACACCTCTAGACCTCTTAGTCTGAAGGCATCTGGAAGGGTCACTTTGTACTAGATTCCTTATCTTGGGAAATGTTTCCAaactgccaaaataaataaatggcgtCCTAAGtatagtattttttctttccacacagTTCTAGCCAAAAGTACCAacatccttcatttgaaagTTACTCATTGATTTTCTTTAGTGTAATACATAGTGGATTTAACCATACTTATGTATCAATGCATTCCTATTTAGCCTAGAGAAGACTGTACATATGCTAATGGTTTAAACAGTTAAGACATTTGACTACCACTCTGTTACTAACTACACACAGTTGAGGAGTTGCATGCAAACCCATTGTCTTAACCAGCTTCAGTCAGTAGGAGTATGTATGGTTTTCCTTAGGCTGAATCCATGTTTAAACAATTGATTCCATTAAATGAATTTTACAGCAGTAACAGCCCCAGTGCTGGTGTATGATCTGTAATATTATCTGCTGTACATCTagctaacaaaaaaacaccaatgcAATGTCTTAAGCCTTGGAATGTGACTGCTCTTGTATGTGCCAGAGCTTTGCAGCAGAATGGGTGAAGCAGagtaaatgtacattaaaaatcCCAGAGTATTATAGTCCTTGTATAAgggcagtgtttgttttttgttttttatataaatataatcctACGGCCTGTGATTTAAGCTTAACATGGTAAGACCTAGAGATTTGAAACATCAACTGCTTTGCAAATGCACTGAAAGCAGAAATCTGCTTGTGTGCCCAGTCTGCACCAGGAGGGAGCTTCAGACAAATGCAGGATGTCATCCTTCTATGGCATTTCCCTCACTTAATGTCCTTAGTTTCCTTTTTATGTATTAgttggtttctttattatttggATGCTACAATCTTCAGCACTAACTGTACCACTGCCAGCGGGCTCTGGCTATGGCCATGTTACTGGGGCTAGTTGAGGATGACGGTAACCAGGGATTTAAAAACTGATGCAAATGACTGGAGGTTGGTTTTGGTCTCCTGTTGTTGACAAACAAAACGGTCTTTCGTGGGGCGTAACGGCTTCTAGGACTTTCTAAAAGATTTGCAAAGGATGCAGCAAATCCGTGCAACAGTGTCATTTgattaaagacattaaaagtTACTCTTCGTATGCAGCTCTTGGTAACCATTTCTATATAAACCTGCAACCAGTGATTGGCTAACACATACCAGTTTTGACTGTTGCAGAAACTGTGTTGCACAGAATGCTGGGAGTTGCTAACACAGTATAGGATTTCTGCACTGTCACAGACTGAAATAACTGACTTTAATTCAGTTTGAATCCTCTCTGCATGCATTGTTCTCTCTGCAGTCTTTTCCcccaagaagaaagaaaatgcttgtCAACTTACCTTGTCTTAATGGTCTGAGATAGCTCTGAATTAAGGAGAGATGTGGTTGTACGTGGGAACAGCGCCCCCAGCCCAGGGAGTGAGTCTTTCAGCCTAATGGGAAATTCCAACTccaacattaaacaataaataacacattcaaattatgaaaaacaaagtccacatttaaaatatatataaattctacATATATGCAgagttaaagaaataaatagatcataaaacatcccccccaaaaaaaaatcacaaatgacCAGTGAGTTTTGGCCACACAATCATCAGTGCTTCCTGATTACCATGTGGCAAAATAAGTCTagattgtgaaatgttattggtttacttcttaaaataaagaaaggtaAATCATGACATAATTcataaatacactttcttttgtatacatttttttttctttacttttaagtcacctttattatttgtattcataattttttcTCCAGTGCTGGAGTGGGCTGGGGCTGGCTATTTGTCTACACAGACAATAGTGCCAAGTTTGAGAACCTTCTAGCTTATGTGTGATTTAAATAGGGGCAGGGGGGATTTCAATTTGTGGTGGCCAATGGGTATCATTAACAACAAtggatataattatatatattgaactGCAGGTGCCAATTTGATCTCAATAAAGTCTGATGCAACAATCAAGGCAGCAGGCTCACTGGGAATGGACTAATGTACTGTAACATGAACATGGTTAGAATACAGAAAATCAATTGGTCCTATGTTGGTCATAATGTCTGCATCCTCTGAACCAAAGAGCTAAACGGTAACTGAATCCTGTAAGGTGTTCTCAAAAGGTGGAATGGAAGCAATATCTGGACAAAAATAAAgggaatgttgttttttttttttgggggggtgggtttgtacaagaacaaacaacaacactaaGTAAAGATCATCCCCTCTTGTTTATAAAGCCTTCAATGCTGTATTAGGTTTAGAGGAAGAgcaggaattgtttttttttttggtttaggttttttctcaatttattttcctttttcgcAGATGTATTTGAATGTGGCAGTCAGCAGTCACGAATGTATCTTTAATTCTAGCATTGCGAGAGATGTTATTGTGGTTAATGTTGTGGGTGATAGGAGCAGGATGGGAGGGTAGGTGTGTGCACAGGAGGAATGGGAAATAATTTGGGGGGGCAGGTAATCCACTACCTTTTTTTGTGGCCGCTTTCTCTTCAGGTTTGTAGACTGTAAGTGCCCTTTTAAGACAGTGGGAGCTTTGTATTGTCAGGCAAATCTAATGCCTTGGGGAGAGGAgggcaggggaggggagggggttggtTATCTCATGTTACACAACTCTCAATCATTTAGGCCTGTCTTCTATGTGATAGCAGTTTattattgcatattattattattattattattaagatatgTACCAGTAAAGAATAATACTGACTGAATATGTTTCTATCCAGAGAGCTGGTCTTTTGTCCTCTTCTTTTACAGCTTGATcaacaataatacatgaatgttttttcttattaatagTCACTGTGTATTGGGTGGGGGAGGTATTAAAGGCATGCGATTTACCAACATGCTTTTGCCACACTTCCCCGAATTGGGCAGTTATTCTAGTCTTGATCTTTCACCACACAAACCTGTTTCACCATTATGTTTTCCATCTGCCCTGCACTGGTCTGTTGGTCTCCTGAGGAAGGTGGG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04456 AKT; RAC serine/threonine-protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55784 lncRNA upstream 37472 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 149498 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 295015 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 407015 32286014 ~ 32286159 (+) True G44620
TU55621 lncRNA upstream 408223 32283614 ~ 32284951 (+) False AMCG00013473
TU55810 lncRNA downstream 44834 32756738 ~ 32758380 (+) True G44769
TU55832 lncRNA downstream 125411 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 371824 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 376912 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 382398 33094302 ~ 33095508 (+) True G44865
AMCG00013490 mRNA upstream 37020 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013486 mRNA upstream 56910 32628927 ~ 32636264 (+) True AMCG00013486
AMCG00013487 mRNA upstream 84377 32604735 ~ 32608797 (+) True AMCG00013487
AMCG00013485 mRNA upstream 93956 32589728 ~ 32599218 (+) True AMCG00013485
AMCG00013481 mRNA upstream 198745 32490071 ~ 32494429 (+) True AMCG00013481
AMCG00013492 mRNA downstream 2520 32714424 ~ 32724784 (+) True AMCG00013492
AMCG00013493 mRNA downstream 40868 32752772 ~ 32756003 (+) True AMCG00013493
AMCG00013495 mRNA downstream 90345 32802249 ~ 32829019 (+) True AMCG00013495
AMCG00013494 mRNA downstream 126281 32838185 ~ 32843351 (+) True AMCG00013494
AMCG00013497 mRNA downstream 141722 32853626 ~ 32876130 (+) True AMCG00013497
TU55641 other upstream 263287 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 263287 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 409675 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 781373 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 1916005 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 394388 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 664616 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 730490 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 983688 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1402769 34114673 ~ 34114939 (+) True G45072

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000203_00294049_00335783.mRNA False 4246 mRNA 0.57 30 CI01000203 293775 ~ 335783 (-)