RNA id: AMCG00013494


Basic Information

Item Value
RNA id AMCG00013494
length 2317
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00013494
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32838185 ~ 32843351 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGTTTGGATAAACTGAGTAGCAATCGGTAAGTATATCTCTCTTAAAATGAACCATCATGTAATTTCTCGACGTTATGTCCCTTTGTTGATGTTTGCGTTACAAGTATCAGTGGCTATTTGTAGCGCTTTCATGTGTGTAtcttaataaaacaattgtagATACATGAATGAACTCTGCTCAGCTAGCTCGCTAATCGTTTGTTTTAGCAACGTCCGGACAACAATGCAATGTCTAAGAGCACACATTATCAATATGTATCTAACATGCATAGTTGCTGGTTTATTAAAATTTCAGTTGAGCTACTGGTAGTTAAACGATTTAAGCTGTCTTGTCCATATCAGGAAGTCGATGAGCTGAGCGGGAGAATCCATTGCTCCTTCGCTGGGATCAGAGCGGTGAATCCGTCGACACATACCTCCTTATTCTAGACCTCTATCGCATTGCTGCATCTGCTCCCGTTTCCTCGGAGGCCATGGCTGGACAGGAGCTTCGGCCGAACCACACCATTTACATCAACAACCTCAATGAGAAGATCAAGAAGGATGagCTGAAGAAGTCCCTGTACGCCATCTTCTCCCAGTTCGGCCAGATCCTGGACATCTTGGTGTCGCGTTCCTTGAGGATGAGGGGCCAGGCCTTCGTCATCTTCAAGGAGCGCATCCAGTACTCTAAGTTGGACTCTGACATCATCGCCAAAATGAAGGGCACCTACGTGGAGCGCGACCGcaagaaggagaagaggaagggcAAAGAGATGGTGGGCGGAAAGAAGGGAATGCCGGGAGCTCCAGCACAGATGGCCCCAGGGGTGCCCACACCCATGCCTGGCATGCCACCGATGAGCCAGGCTCCACGCATGATGCCCATGCCTGGTCAGCCCCCGTACATGCCCCCGCCTGGCATGATGCCCCCACCAGGGATGGGACCTGGACAGATGCCTCCTGGAGCCATGCCCCCTGGCCCGATGATGCCAGGACAGATGCCCGGACAGATGCCTCATGCCCAGGTGCCTGAGAATCCACCAAACCACATCCTGTTCCTGACCAACCTGCCTGAGGAGACCAACGAGCTGATGTTGTCTATGCTCTTCAATCAGTTCCCTGGCTTCAAAGAGGTGCGCCTGGTCCCCGGGCGGCATGATATTGCCTTTGTAGAGTTCGACAACGAGGTGCAGGCAGGGGCGGCCCGCGAGGCACTGCAGGGCTTCAAGATCACGCAAACCAACGCCATGAAAATCTCCTTTGCCAAGAAATAACCCCCTGACAGGACGTCTGCCAACACAGGGGTCCGGCCTCCTTGTAGTGTTATGCGATAGGGTGAgcttttaaaaaccaaaaacataaaacgatcaggagaaaaaaacagaacaaagatgCTCGGTACAGGTAAGAAGGGTGATGGCGCAGCAGCATCGGACAGAAGCGCCCTCCTGACTGCTGCACAGGTATTTGTGTCAGTGCAGCTGATTTTCaactatatattttagttttgttcctccCAACCCCAGTCAGCCCCTTGCTATTGCAGcttaaatcacaaaaaagtGACCTGTTGACCACCATTCCTGTCTTTGATTTGTgggttacaaaaaaatacatttttaaatcgtATTTATTACATATACCCTCCTCCTCATTCAATGCAAGTCTTAGCCTTCCTCTAACAGATTTGCACTGCCCCCCACCATCTCTGCTCAGGTCAGGAATGCTACTGTTCGGTAGTTCCTATGCTCAGGTTCAAACCCCCTCCCTCCACTTCAGTTTGGGTTTGAATGTCccagtcctgctgctgctggatcCAACATCTGAGCTGCGGAGTGGAATAAGTGACAGCTTCTCTTTTGAAGGGGAGAGTACTGGGGGAGGAAGAGTTTGGTAATAGGCCTTCGTATCCAACTCTTTAACAGGGGGGGCCAGGTGTTGCCTTGCAGTTTGGCCCACACTCTCCAGCCTGCTCTTTATCTGCATTGTGactgtggtttttatttttattttcttgtacagTTCTGATTTTTGAAGCATTGCACCCAGAGTCTGGCCATCAGACATTGTACCTGGAGCTTTCTGTATTTGATTAAAAGTTTTTATATGCTGTATTTTGTCCTGCTGTTTTGAATTTTCTGCTCATGTTACCCTGACTTAAAAAAACCTTCCCTTTAAAAGACTGCCTttgtaaatgcacattttgcTAACCCATTTGATCTATATTGATATTAAATATAAGCTTTCCTCTTATTTTCCAAGAGGAAATGCTGCTGTCCCAACAGTACTGCTTCTGCTTTTTTGACATGCCAGGATTTTAAGCAAGGAAAAT

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0017069 snRNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11091 SNRPA; U1 small nuclear ribonucleoprotein A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55832 lncRNA upstream 342 32837315 ~ 32837843 (+) True G44790
TU55810 lncRNA upstream 79805 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 182483 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 294509 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 440026 32396854 ~ 32398159 (+) False AMCG00013477
TU55923 lncRNA downstream 240377 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 245465 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 250951 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 257123 33100474 ~ 33100687 (+) True G44867
TU55931 lncRNA downstream 259288 33102639 ~ 33102873 (+) True G44868
AMCG00013495 mRNA upstream 9166 32802249 ~ 32829019 (+) True AMCG00013495
AMCG00013493 mRNA upstream 82182 32752772 ~ 32756003 (+) True AMCG00013493
AMCG00013492 mRNA upstream 113401 32714424 ~ 32724784 (+) True AMCG00013492
AMCG00013491 mRNA upstream 126281 32693174 ~ 32711904 (+) True AMCG00013491
AMCG00013490 mRNA upstream 182031 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013497 mRNA downstream 10275 32853626 ~ 32876130 (+) True AMCG00013497
AMCG00013500 mRNA downstream 44803 32888154 ~ 32917516 (+) True AMCG00013500
AMCG00013498 mRNA downstream 84465 32927816 ~ 32947713 (+) True AMCG00013498
AMCG00013499 mRNA downstream 107964 32951315 ~ 32963942 (+) True AMCG00013499
AMCG00013502 mRNA downstream 134580 32977931 ~ 32996084 (+) True AMCG00013502
TU55641 other upstream 408298 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 408298 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 554686 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 926384 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2061016 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 262941 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 533169 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 599043 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 852241 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1271322 34114673 ~ 34114939 (+) True G45072

Expression Profile