RNA id: AMCG00013495


Basic Information

Item Value
RNA id AMCG00013495
length 2148
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00013495
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32802249 ~ 32829019 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAATCCGCAGAATAGGCAGCGAGGAGCGGAGGGATGACCGGTTTAACCGGAATATATCGAAAACGAAGGAGTTGCCTCGACTTGAGGAGACACTCCGGGGCTCAAGTGCTCACGCTGTAGCTCTGAACAACAGCCAAGTTCCGCAGCTGCCCGGGAAGGGAGATCCAGAGCAGACCAGGACTGTGGCAGACAGCAAAAGCGCTGCGGGTCGCCTGGGTGTGAAAGCTGGGCCGAAGGAGGTCTCCAACAATAGAGTCTCAACGAGAAGTTCTGGGGAGGTCCCTCTTGATGAAACGGGCTTTGATATCGGGTCGAGCGAAAACGGCCTGGGCAGCAGTCACGGCAGTGTTGTGTCAGACTCCAGGCGAGACGGCAGCACCGTGTCGCTGAACGGGGACCATGATAGTAATGCATTGGACCGGAACATGGAAAACCGCAACGAAAGAAGTGCCTCAGTACCCCGCTGCTGCCTGGCGCAGGACAGGCCGGCCCAGACCGGCATCTCGGAGGAGCACAATGTGAGGAAGCGAATGGAGCTGGGCTTGCAGCTGGACGCGTACAGCGGCAATAGCGCGTCCAGGAGCGTCAAAAACGTCAGCATGAGGAGCCAGAGCTGTCCCGCCGAGTCGGGGAGCACGGACCCCGACAGGAGTTTCGCTGTCTTGGGGAATCATTCAGAATTAGGAAGCGAGGAACAAGAAGAAATTATTTGCTCCATTCCGGGCAGCCAGAGCTTCCCCGGGACCATCCCGAGACTCATCGTCACCAGGGAGCCGAGCCCCAGTCGAGGCGGGGGGAGGCTGGCAAGTGTCTGCGATGGGGGGTCGGCACTGGACACGCACCCGGACGAGGAGTCCCCCTGCTCGGACAGCGGCTGTGGTGGCTCCCCGGCCCCTTCCTTGCTCCTTCGCAAGCTGTCCAGCTCTTCCTCCGCCGGACTGTCTTCGGCTTCTTCTTTCGAGGAATCGGAGGACGATTTCACCGGCAGCGACATCGAGCCGAACAGCCTACTTCTGCAGAACACGCTGGGCAGTCCGGACGAGGCGGGAGGGggcaggagggaggaggaggaagaggccCTGGTGTCTGGGGAGCTGTCCTGGGTACAGTTGGGTCTTCTGTCCCAGGTGGATGGGGTTTGTGTTGGCAGGGGGTCTGGGCTGATATCCCAGAGTTTTCCTGATAGGAGTGGTGTTCCAGGTCAGCAGTACAGAGGTCTGACATGCTTGTGTTTCTGTCCTTCTCCGCAGAACAAGTGGAAGAAGCTGAAGACCATGGTGCACTGGTCTCCTTTCATTGTGTCCTTCAAGAAGCGCTATCCCTGGGTGCAGCTAGCAGGGCATGCAGGGAACTTCAAGGCAGGAGACTACGGCAAGATCCTGAAGAAGTACTGCGAGTGCGAGCAGCAGTGTCTGCAGTGCCTGATGGGAGACACGCTGCGGCCCTTCGTCCCAGGGTACTATGGAGTGGTGGAGCGGGACGGTGAATCCTACAATCAGATGGAGGACCTGCTGGCAGAGTTTGACTCCCCCTCCATCATGGACTGCAAGATGGGCAGCAGGACGTacctggaggaggagctggtgaaGGCCCGTGAGAAGCCCAAGCCGCGGAAGGACATGTATGACAAGATGGTGGCGGTGGACCCGCAGGCCCCCACGGCCGAGGAGCGTACCCAGCAGGCCGTGCTCAAGCCGCGCTACATGCAATGGAGGGAGACGCTCAGCTCCACCGCCACGCTGGGCTTCCGCATCGAGGGCATCAAGAAAGCTGACGGCACCTGTAACACCAACTTCAAGAAGACCAAGCACAAAGAGCAGGTGACGAAGGCGATGGCAGACTTTGTCGATGGGAACACAAATATCCTGaaaaaatacttaatgaGGCTGGAGGAGCTCCGAACAGCGCTAGAAAAATCAGAATTCTTCAAATCCCATGAGGTGGTGGGTAGCTCTCTGCTGTTCGTGCACGACGAGACAGAGCTGGCCCGCGTGTGGATGATTGACTTTGGGAAGACGGTcaagctgccccccccccagacCTTGGATCACCGCGAGCCCTGGGTGGAGGGCAACCGGGAGGATGGCTACCTCTGGGGGCTGGACAACCTCATTGACATCCTCCAAGCCATGGTGCCCGCCTGA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity molecular_function

KEGG:

id description
K00911 ITPK; 1D-myo-inositol-triphosphate 3-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55810 lncRNA upstream 43869 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 146547 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 258573 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 404090 32396854 ~ 32398159 (+) False AMCG00013477
TU55623 lncRNA upstream 516090 32286014 ~ 32286159 (+) True G44620
TU55832 lncRNA downstream 8296 32837315 ~ 32837843 (+) True G44790
TU55923 lncRNA downstream 254709 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 259797 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 265283 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 271455 33100474 ~ 33100687 (+) True G44867
AMCG00013493 mRNA upstream 46246 32752772 ~ 32756003 (+) True AMCG00013493
AMCG00013492 mRNA upstream 77465 32714424 ~ 32724784 (+) True AMCG00013492
AMCG00013491 mRNA upstream 90345 32693174 ~ 32711904 (+) True AMCG00013491
AMCG00013490 mRNA upstream 146095 32642445 ~ 32656154 (+) True AMCG00013490
AMCG00013486 mRNA upstream 165985 32628927 ~ 32636264 (+) True AMCG00013486
AMCG00013494 mRNA downstream 9166 32838185 ~ 32843351 (+) True AMCG00013494
AMCG00013497 mRNA downstream 24607 32853626 ~ 32876130 (+) True AMCG00013497
AMCG00013500 mRNA downstream 59135 32888154 ~ 32917516 (+) True AMCG00013500
AMCG00013498 mRNA downstream 98797 32927816 ~ 32947713 (+) True AMCG00013498
AMCG00013499 mRNA downstream 122296 32951315 ~ 32963942 (+) True AMCG00013499
TU55641 other upstream 372362 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 372362 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 518750 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 890448 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2025080 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 277273 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 547501 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 613375 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 866573 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1285654 34114673 ~ 34114939 (+) True G45072

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035986 True 1974 mRNA 0.51 7 NC_007131.7 38387181 ~ 38446891 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_07001011_07007919.mRNA True 3198 mRNA 0.44 7 CI01000006 6999908 ~ 7008739 (-)