RNA id: AMCG00013498


Basic Information

Item Value
RNA id AMCG00013498
length 2983
RNA type mRNA
GC content 0.54
exon number 20
gene id AMCG00013498
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32927816 ~ 32947713 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCAGTGCCATCATGTGGCACGAAGCCCGTAAACATGAGCGCAAGCTGCGTGGGATGATGGTTGACTACAAGCGGCGGGCTGAGCGGCGCCGAGAATACTACGAGAAAATCAAAAAGGACCCGGCCCAGTTCCTGCAGGTCCATGGGAGAGCCTACAAGATCCACCTGGACTCTGCTGTCGCCCTGGCAGCTGAGAGCCCAGTCAACATGATGCCCTGGCAAGGAGATGCCAACAACATGATCGACCGGTTTGATGTCCGTGCTCATCTGGATTACATCCCCACCTACACCCCTCCCCTGCTCAACACTGTAACCCCAGAGCAGGAGTCTGACGAGAGGAAGTGCAACTACGAGCGCTACAGGGGCCTAGTGCAGAACGACTTCGCCAGCATCTCGGAGGAGCAGTGTTTGTACCAAATCTATGTGGATGAGCTGTATGGGGGACTGCAGAAGCCCaatgaagaagagaaaaagaaGCTAGCAGAGAAGAAGGCCACAATTGGGTACACATATGAGGACAGCACAGTGACGGAGGGCGAGGGCCTGTCTGACCAAGGGGAGGATGAGGACTCCGAAAACAGCGAGAGCGACGAGGACGGGGTCATTCCTGACATTGATGTGGAGGTGGATGTGGACGAGTTGAATACAGAGCAGGTTCAGGACTTGAACAAGATGGCCACGCCCTATGGCATGGCAGAGGGAGACTTTGTCAGGATGCTGAGGAAGGACAAGGAGGAGGCTGAGGCCATAAAGCATGCCAAGGCCCTAGAGGAGGAGAAGGCCATGTACTCGGGCCGGCGCTCACGGAGACAGAGGAGGGAGTTCAGAGAGAAAAGGCTAAAGGGGAGACAGATCAGCCCACCCAGCTACGCGAGGAGAGACAGCCCCACCTATGATCCCTACAAACGGTCCCAGTCAGAGTCGAGCTCGGAGTCCCGCTCACGCTCGCTCTCGCGCAGCCCCGGTCCGGAGAAGATCACCTTCATCACCAGCTTCGGGGGCAGTGACGAGGAGGGAGCCGGGCCCCCCCCCGCGCCTGGCCGCGCGCCCCCTCCCTCCAAACACCACACCACCCCTTCCGCCCCATCAGGTCATAGCAGCTCTTCCCGGCGGCGCTCTTCCTCCACTTCTTCGTCGTCctcgtcctcttcctcctcctcctcccgctcGTCCCGCTCCAGCTCCCGGTCCCGCTCCAGCTCCCGGTCGCGGAGGGGCCGGCGGCGGGGGGGGAGGTACTCCCGCTCTCGATCTCGGTCACGGGGCGGGGGGGGACGCCGGCGCTACACCCGGAACCGCACTCGCACCCGCTCCCGCTCCCGCTCCCGCTCCACAGACAGGGGTCGCCACTACAGCAACCGCCGACGCACCAGGTCACGTTCCCGCTCTCGCTCAGCTGATCGGTACAGAAGGGGCAGCCGAGGAGGGGGTGCCAGGCGGGCAAGCAGCAGTCCTAGCCCCCCAGAGTCTCCCTCACCCAGccgctccccctccccccgtcACAGCCTGCCTGCCACAGCCAGCCTTGTGGACAAGCTGAGAAAGGCTGAAACTCCTGGTGGTAAAGAGACGGGAGCTGCCAAACCCAAGATGACACCTCAGGAGAGACTGAAGCTCCGCATGCAGAAGGCGCTTAACAAGCAGTTCAAGGCTGACAAGAAGGCTGCACAGGTGAAGATTCAGCAGCAGGAACATGAGAGACAGGAGCGTGAGGATGAACTGAGGGCTATGGCTCGCAAGATCCGGGTGAAGGAGCGAGAGCGGCGGGAGAAAGAGCGCGAGGAGTGGGAGAGGCAGTATGGCAGACAGAGCCGGTCCCCCTCGCCCAAACACAgtCGTGAACACAGCTCATCTAGAAGGAGGTCTCGCTCTCGATCAAGGAGTCCACACTACCGATACTGAACAACGCGCTCTGCTCCAGGCCCAATTCTGGCTGCTCGGAGGCCTCGGTCTCCAAccaattggattttttttttttgttgttgacgTTTCTGCCTTGCATACTGGGAATGGAAAGCAAAGCTGGATGAGCAATCAGCTTCCAGCACCTAAATACCATCATCACCAGACTGCAGGCTGTTTTGGAGGACAACTGGCAACGCAGATGCAGGACTAAGGCAGTCAGGTGTGCTTTTGTGTGGTAAACCATGACCTGGCTATCGGCCCACATCTTTTCAGGACATTGTTTGGGATTCCTTTGGCTCTTCTGTtgacaagttgtttttttttctctccatttattGGATTCCACAGATTCTAAAAGTCACGACATTGTCTAAGTGCTTTGCCGAGATCTTTGTTCTACATGCTGACCACATAATCCTAGACAGTGTTCATCTTTGgaatgattatttttctttctgaccTAGGTGTGAAGGGTTGTGGCTTTTTTTCCCTGCTCTATTACTCATATTTGTGCATCTTCCAATGTGCTTGCCTGCTCACATGCACAAACATGTTATATGAATATTAAGGATAATATTGTCAGGACTAATTTGTCCAAACATGGGTCTAAGCACTCTAAGCACTCAAAACACTGTGTAATGGTCtccatacagaaatgtatatctgttgtctctttaaaaaaaaaaaaaaaaatagccgtTATGAGGTTAATCTTAAGGAAGAGGAGTGGGTGAGCTCCGTCTGGCTCTTCATTTGCCCTGTGTACAGTTGACCTGTGACTGACTTGTCTGAGGTCCCTGCTATCCTTGACACTTCACTTATAGATCGTTGGGCACAAGTGTCCGTTTGCCCTCCTCCAGCACTCTGTATGGGTATGAAATGTCTGATGTACAGAACATGATCACAAAGAAAAAATTATTGGTAGTGAACTGCTATGTAAAAGAAACTGAATTGGATTTTTCTGAAGCATTTTCTGTGATGTcttctgaactttttttttgtgccctTTCTCAAAccaatgtatataatgtttcgCATCAGCTGTTAGTGAATGAGTAAAAAGTTCATACCACCAA

Function

GO: NA

KEGG:

id description
K13168 CLASRP, SFRS16; CLK4-associating serine/arginine rich protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55832 lncRNA upstream 89973 32837315 ~ 32837843 (+) True G44790
TU55810 lncRNA upstream 169436 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 272114 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 384140 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 529657 32396854 ~ 32398159 (+) False AMCG00013477
TU55923 lncRNA downstream 136015 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 141103 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 146589 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 152761 33100474 ~ 33100687 (+) True G44867
TU55931 lncRNA downstream 154926 33102639 ~ 33102873 (+) True G44868
AMCG00013500 mRNA upstream 10300 32888154 ~ 32917516 (+) True AMCG00013500
AMCG00013497 mRNA upstream 51686 32853626 ~ 32876130 (+) True AMCG00013497
AMCG00013494 mRNA upstream 84465 32838185 ~ 32843351 (+) True AMCG00013494
AMCG00013495 mRNA upstream 98797 32802249 ~ 32829019 (+) True AMCG00013495
AMCG00013493 mRNA upstream 171813 32752772 ~ 32756003 (+) True AMCG00013493
AMCG00013499 mRNA downstream 3602 32951315 ~ 32963942 (+) True AMCG00013499
AMCG00013502 mRNA downstream 30218 32977931 ~ 32996084 (+) True AMCG00013502
AMCG00013501 mRNA downstream 67602 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013504 mRNA downstream 84899 33032612 ~ 33045354 (+) True AMCG00013504
AMCG00013505 mRNA downstream 109048 33056761 ~ 33061280 (+) True AMCG00013505
TU55641 other upstream 497929 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 497929 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 644317 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1016015 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2150647 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 158579 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 428807 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 494681 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 747879 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1166960 34114673 ~ 34114939 (+) True G45072

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025794 False 2758 mRNA 0.48 21 NC_007129.7 36601556 ~ 36631294 (+)