RNA id: AMCG00013499


Basic Information

Item Value
RNA id AMCG00013499
length 1311
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00013499
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32951315 ~ 32963942 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGGCAaatgtaaaaatgcagtcaTTGAGAGAGAGTGCCATGGTGATGACTCGGAGCTAGGGGATGTGCTGGAAAAGGTGTGGCTACAGGATCCCAGTGGCCGTGACCTCCTCACCTGTGGGCAGTGCCGCCACACCTTCCCCCTGGCCCACATCACCGTCTTCATCCAGCACAAGAAGGGGCCATGTGGAGGTGGGGCGTGCCCTGGGGAAGCGGGGCTCCTGGGACACAGCCCACCTTCCCCCCCAAATAGAACTCTGAGGCACACCCTGTCTCCGTCCAAAGGCGCTCTGGCAGCGGGGCCCTGGGATCTGCCAACTGGGGTGATTAACGGGCACAAGGGGAGCAGAGCAGTGCTAAAACAGGAGACTCTTGGGGcagACCTGGTGGAGCCATCATGCTACACCTGCCACTCGTGCCAGCAGCAGTTCCCCGGAGCCTGGCCCCTCTTGCAGCATGCGCAGAACATGCACGGCTTGAACATCTACCTGGATTCCCCCCACGAGCCGCCGGGGCCCAGGGGAGTGGCTACCTCCATCCCCCTGGCAGAGCACCCCCCCCAGCCATCCAGCCTACCGGAGTCTCACAGGTTGCGGCCCTCCCTGCTTGGCGGCTTCCCCCTGGCTCTCCTGCGGCTCCCCCAGCTCAAGTCCCCCTTCACCGAGGTCATGGATACCACACCTGGCTCCCCTAGCCAGGATCAGGCACTTAACTTCTCCACCCGTCTCAGGGAGCTGGCAGGCAGTGTtgtctccccctcccccccatccccTGAGGGTCAGCAGCTGGAGGCCGCCGTGCCAGGGAGTCCGGAGGAGTCACCGGAGGAAGCTGCAGGTAACAAAAGTGGAGGGGCACTCCCGATCATGGGCGAAGGGAGCCTGTTGTCCTCACTGGGCTTAGTCCCCAGTTCCTCGCCTGGAAAGCAGGGCCTACTTAGTTTCTTCCAGAGGCGGGCagagcagcaacagcagcagcagcagcaggaggaggaggaagaggagcaggaggagggcCACGTCGTCCCAGGGGTCCACTCTGGTGCAGAGGAATCTGGGAAGGAGTCGGAGGCAAGTCCCTCGGGAGAGCTGCGGCGCTCTCCATTCGGGAACACCTCGGAGGCGTCTTTGGAGAATGGCGAGGGCGGGGCACCCCAGAGCTCGGAGGAGAGCGGCATCGCCAGCGGCAACTGCACCCCCAAACTCTATGCCACCCTGGAGAAGCACCTGAAGAAGTGCCACAGCGCCGAACAGGCCAGCCCCAGCCCCACCACGCCAGCCCCCGAGCTCAGCCTAGAAACCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55832 lncRNA upstream 113472 32837315 ~ 32837843 (+) True G44790
TU55810 lncRNA upstream 192935 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 295613 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 407639 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 553156 32396854 ~ 32398159 (+) False AMCG00013477
TU55923 lncRNA downstream 119786 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 124874 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 130360 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 136532 33100474 ~ 33100687 (+) True G44867
TU55931 lncRNA downstream 138697 33102639 ~ 33102873 (+) True G44868
AMCG00013498 mRNA upstream 3602 32927816 ~ 32947713 (+) True AMCG00013498
AMCG00013500 mRNA upstream 33799 32888154 ~ 32917516 (+) True AMCG00013500
AMCG00013497 mRNA upstream 75185 32853626 ~ 32876130 (+) True AMCG00013497
AMCG00013494 mRNA upstream 107964 32838185 ~ 32843351 (+) True AMCG00013494
AMCG00013495 mRNA upstream 122296 32802249 ~ 32829019 (+) True AMCG00013495
AMCG00013502 mRNA downstream 13989 32977931 ~ 32996084 (+) True AMCG00013502
AMCG00013501 mRNA downstream 51373 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013504 mRNA downstream 68670 33032612 ~ 33045354 (+) True AMCG00013504
AMCG00013505 mRNA downstream 92819 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013503 mRNA downstream 116795 33080737 ~ 33083411 (+) True AMCG00013503
TU55641 other upstream 521428 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 521428 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 667816 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1039514 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2174146 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 142350 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 412578 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 478452 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 731650 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1150731 34114673 ~ 34114939 (+) True G45072

Expression Profile