RNA id: AMCG00013500


Basic Information

Item Value
RNA id AMCG00013500
length 1623
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00013500
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32888154 ~ 32917516 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGTAATCCTCTATGTTCGTAATGAGATGCATGCTGTTCCTTCACTTGACtcctggAAATCCTTCTCTCTGATCCTGGAGGTACTGGATCATGACAACGAGACCGCAGAGCCAGtTCTAGGGCAGGGTGAGCTAATCGACCGGGTGCTACTATCCTCCATGCTGAACTCCGGGGAGCAGTGGCAGAACTTCCGGCACCACGGCCGCTCCAACCTGGAGTACAAGCTGCGCTTTCGCTGCGAAGCCAACTACTATGGCCCCCTATGCAACAAGTTCTGCCGCGCACGTGACGACTTCTTCGGCCACTTCAGCTGCGACCCCAGTGGCATGAAAATCTGCATGGATGGCTGGATGGGGCCCGAGTGTCGCcaggCTGTCTGCAGACAGGGCTGTCACCTAGCCCATGGCTACTGCAATTTACCAGGAGAGTGCAGGTGTCACTATGGTTGGCAGGGGTCGCTGTGTGACCAGTGTGAGACATTCCCTGGCTGTGTTCACGGCAGCTGTACGGAGCCCTGGAAGTgcgtgtgtgacaccaactgggGGGGCCTGCTGTGTGACAAAGACCTTAACTTCTGTGGGACACACCAGCCTTGCCGGAACGGGGGTACCTGTGCCAACACAGAGCCCAACGAGTACCAGTGTGTGTGCCAGGAGGGCTTCCGGGGGCGTAACTGTGAGATCGTGGAGCACGCCTGTCTGTCCAACCCCTGTGCCCACGGAGGGACCTGCCTGGAGGAAGCTGGGGCATTTCGCTGTGCGTGTCCTGAGGGCTGGACTGGAGCCACCTGTACTGCTGACTCCAGCGAGTGCCAGTCCAGTCCTTGCAGTCAGGGCGGGACCTGCCGGGAGCTAGCGCAGGGGTTTGAGTGCCTGTGCCCACCGCAGTGGACTGGCAAGTTGTGCCAAATAGACACGAATGAGTGTGACACAGGGGTGTGTGTCAATGCCCTGCTTTGCCGCAATCTCATTGGGGGATATATCTGTGACTGTCTGCCAGGCTGGACAGGGCAGAACTGTGACATCACTATGAGCCTTGAATCTCTGACAGGGTGCCAGTGCCTGCCAGGATACACGGGGCCGCTCTGTCAGACCCGACTGAGCCACTGTGAAAGTGCCCCCTGTCTGAATGGGGGACACTGTATTGAGCAGGAGGCAGGGCCCAAGTGTCACTGTCCTCTGGGTTACAGCGGGGAGCACTGCGAGGTGGTGCTGAACCTGTGCAATCCAAATCCTTGTCAGCAAGGGGTGCCGTGTCAGAGCACTGAAGGTGGCTACCTTTGTGCCTGTCCTGAAGGCTACGAGGGCAACGAGTGCATGAGCCTGAAGGACCCCTGCCATGGGACACACTGCCAAGGTAGGCCCTGGACGAAGGAGCGCCAGCAAGCTGGGCAGGATGAGGGCATCAATAACCAGCGTGAGTGCGTCACTCTCATCCGCAACCTGGAAAAGCCCCCGCCCCCAGGAGCCCGCCACTGCGAGGAGATTGAGCTGTCGCTGCCATCCACCCCTGATGCCAAGAAGCCCCGGCAGGCCAGCACCAAGCTCGACATCTCCAACAGTGAGCGTGAGAAACTCAACCGCTTCCACTTCCCTGAGAACCAGGAACTAGAGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55832 lncRNA upstream 50311 32837315 ~ 32837843 (+) True G44790
TU55810 lncRNA upstream 129774 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 232452 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 344478 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 489995 32396854 ~ 32398159 (+) False AMCG00013477
TU55923 lncRNA downstream 166212 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 171300 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 176786 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 182958 33100474 ~ 33100687 (+) True G44867
TU55931 lncRNA downstream 185123 33102639 ~ 33102873 (+) True G44868
AMCG00013497 mRNA upstream 12024 32853626 ~ 32876130 (+) True AMCG00013497
AMCG00013494 mRNA upstream 44803 32838185 ~ 32843351 (+) True AMCG00013494
AMCG00013495 mRNA upstream 59135 32802249 ~ 32829019 (+) True AMCG00013495
AMCG00013493 mRNA upstream 132151 32752772 ~ 32756003 (+) True AMCG00013493
AMCG00013492 mRNA upstream 163370 32714424 ~ 32724784 (+) True AMCG00013492
AMCG00013498 mRNA downstream 10300 32927816 ~ 32947713 (+) True AMCG00013498
AMCG00013499 mRNA downstream 33799 32951315 ~ 32963942 (+) True AMCG00013499
AMCG00013502 mRNA downstream 60415 32977931 ~ 32996084 (+) True AMCG00013502
AMCG00013501 mRNA downstream 97799 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013504 mRNA downstream 115096 33032612 ~ 33045354 (+) True AMCG00013504
TU55641 other upstream 458267 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 458267 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 604655 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 976353 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2110985 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 188776 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 459004 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 524878 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 778076 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1197157 34114673 ~ 34114939 (+) True G45072

Expression Profile