RNA id: AMCG00013502


Basic Information

Item Value
RNA id AMCG00013502
length 2991
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00013502
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 32977931 ~ 32996084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTGCACCCTCGGCAGCCCGCTGCAGCACAGGGACCAGGACTACGGCCAGCTGCGCGACGCCTGCCTGAAGTGCAAGTCGCTGTTCGAGGACCCCGAGTTCCCGGCGCAGCGGAGCTCCATCGGCCTCCCCGCCGACACTGACCCGGCCCGGGCGCTGAAGTGGCTCCGACCCAAGGAGATCAACAAGAATGCCAAGTTCATTGAGGGCACGGCGAGCACCAATGACATCTGCCAGGGACAACTGGGTGATTGCTGGCTCCTGGCTGCTCTGTCCTGTCTGACCCTCCACCAGCCTCTCTTTGCCAATGTGttCTGGCAGTATGGGCAGTGGGTGGATGTGGTGGTTGATGACCGGCTGCCTGTGCAGAGTGGGCGCCTGCTGTTCAGTTACTCCCGCACACAAAATGAGTTCTGGAGCGCCCTGCTGGAGAAAGCCTACGCCAAGTTGAATGGCTGCTATGCCAGCCTGAAAGGGGGCAACATCACAGAGGCCATGGAAGACTTCACGGGGGGCATTGCCCGCTCTCTGTCCGTGGCCTCCAGGACCCCGGCCGTGCTGTGGAGGGCGCTGGGCAGCTCGCTATCCCGGGGCACCATGCTCTCCTGCTTCATCCAGGCGGTCAATCGTGCTGAGGTCGGGATGGTGACGCCCGAGGGGCTGGTGAGGGGTCATGCCTATGCCATCACTGCCACTGATGTGGGGGCCTGGGTGCCGGGCTGCTCTGCGGGAGGCAGCCGCAAATACAGGCgCACATTTTGGACAAACCCCCAGTACCGCCTGGTCGTGTCCCAGCTGGATCACCAGGATGTGGCCGATGAGAACGATGACGATGCGGAGGAGCAGGGTGGCCTTGAAGAAGACGGCGAGGAGGCGGTTGCCGCGGTGCAGACAGACCGGCGCACAAGCAGCACTGTGGtggtggagctgctgcagaaacACTGCCGCCAAAAGGACAAGATCAACTTCATGTACATCGCCTTCCACATCTACAGGtTGCAGGATGATCCCAGTTCCCTCAAGGCAAGCTTCTTCTCCTCCAACAAACCGGTGTCGCGCTCCGGGAAGTACCAGGCACAGCGCGGCACCCGCAGGAAGGTCCGCCTGCCTCCCGGGAACTATGTCATCGTGGCTTCTACCTTCAAACCCAACATCCAGGGCAGCTTCTTTgttgTGCTGGCGAACCCCATCGCCCCTGATGACCGGAGCAAAGTGCAGGTGTTGTTCAAGCAGCAGGCTGGACTGGACAACAGACTGAATGCAGTGCAGTTCAACAAGCTTCTGAACTCAGGTTTCCTACTGGATCCCCCTGTACTGCAGCAGCTATGGCTTCGTCATGGGACAGCTGACCTGCTGCTGTCCTTTGATGGCTTTGTGGCATGCATTGGCAAACTGCGCAAGCTCTTTGTGGCTCCTCAGGTTTATTGGAGTCTAGAGATCTGGATGGATGCAGAAGCCAGCACCTGTCCCAGCTCCAGAGACCCCTCTCTGCCTTCTCTCCACCCGCCTCTTTCTCACAGCTCGGCAGTAAGACCACACATCCACCTGAAAGCATTGAGCCTCGTCTCCCTCTGAGCAATGTCCCTGCCACcttcaccacacacacacacacctgcttgtaaaatgtttttttaaatacctacTATCATATCCAAATGAAACTATTAGGACAGGGACATAAACCTGTATATATGATCcatagggccctgtgttttgcatgtgttgttttttttaaattgcatttcagtCATGCAAAAAGCAGAGCCCTAATTATATGTTATGATGATATGATATTACATTCTACAGACCAACAGGCATTGATACCCACAGTATAATAAATTGGCTTAACTTTGCCAAAACAGAAACTAAATCTTGGCTTTAAACTGCTCCCCTTCCCCTGAGAGCCTTCTGACACTCCCGAGAATAGCAACTGAGATGAGCAATTGACATCTTGAGACTTGACCGGGCTGCCCTTCTTCCCGCTGCCTCAATGCCAGGCTGAGGCTAACTGGCAAATATGCTCTCAGCCTACAGCTGGCATCTGTCCCTCCAATAAACCTGGGGCCGGGCTCGTCCTGTGTAACACTCTCCATTCTGTTGGCAGCAGCTCATGCGCCAACCTCGGTCGAAGGGTTGAGctctttcaaaatgtgtacCCCCCATGCTTTTGAGTTTaatcatgaaaataattattataatgaatcaTTATGCAGTTTTATGATGTCATTTCAAAAGGCAGGTAAGATTATTAGCAAAAGAAAGCCCGTAAATGAACAGACAGATTCAAACAATGTAACTGTATTCTCACTCCAGGgaacagtacattttttttcctcgcGCAATGTTGTGGTGAATTTCCAAACACTGCCACATCTCTCACCCTGTCCCCTATTTCCCATTGCTTCTTCAGTGCGAAAGTATAACCATATTGTAATCTGTCTATAACCAAGCCTGCAATCTTTAGGTACTACAATGTAACCCTTTTTGTTATGCTGATCATTACTATTTGTAGTAGAAGGAATATTAGTAGCAGTAGCAACATTATCAGTGTATGTGCACCAGGGCTACCTGGTTGTGGAATCCACTTGGGCTATAACATGTACAATCCTGAGTGGGGCacttttaacagtgttttacTGTGGCTTCACCATAGATCTAAAGTGGTTTCCTATGGTCTCAAGCTGGGACCATAAGTAAACCATAGGGTACCATAGTCAACATACCTTAGAACCATTTATTATTGTAGATGAAGACATGTTGATCCCATAGGAAATCACTGTGCAGTAAAGCCATGTTAAAAGTGTTGGGGGGTGGAATCTACTAATGTAAAACTTGCATTAGGAACATATtaaccttatttttttcttcgTCAATGTTTGTAATGTTGTACTTATTAACAAGTGCCTTTCCGGTGCCGGCCTCCCTTAGCACAGTGGTGATTCACCTGTGGTCTGTGAATAAACTTCTGGGTCTCTGGGAACACTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55832 lncRNA upstream 140088 32837315 ~ 32837843 (+) True G44790
TU55810 lncRNA upstream 219551 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 322229 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 434255 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 579772 32396854 ~ 32398159 (+) False AMCG00013477
TU55923 lncRNA downstream 87644 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 92732 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 98218 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 104390 33100474 ~ 33100687 (+) True G44867
TU55931 lncRNA downstream 106555 33102639 ~ 33102873 (+) True G44868
AMCG00013499 mRNA upstream 13989 32951315 ~ 32963942 (+) True AMCG00013499
AMCG00013498 mRNA upstream 30218 32927816 ~ 32947713 (+) True AMCG00013498
AMCG00013500 mRNA upstream 60415 32888154 ~ 32917516 (+) True AMCG00013500
AMCG00013497 mRNA upstream 101801 32853626 ~ 32876130 (+) True AMCG00013497
AMCG00013494 mRNA upstream 134580 32838185 ~ 32843351 (+) True AMCG00013494
AMCG00013501 mRNA downstream 19231 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013504 mRNA downstream 36528 33032612 ~ 33045354 (+) True AMCG00013504
AMCG00013505 mRNA downstream 60677 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013503 mRNA downstream 84653 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013509 mRNA downstream 196551 33192635 ~ 33239625 (+) True AMCG00013509
TU55641 other upstream 548044 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 548044 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 694432 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1066130 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2200762 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 110208 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 380436 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 446310 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 699508 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1118589 34114673 ~ 34114939 (+) True G45072

Expression Profile