RNA id: AMCG00013504


Basic Information

Item Value
RNA id AMCG00013504
length 2809
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00013504
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33032612 ~ 33045354 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTATCTCCGGCGCCAGTTCGGATTCAGCCTCGACCGGATGTCGCGTCATCACCCCGCCGGACGCAGCTGCCGTTCATCAAAGATGGCGTCGGTGACAACAGCTACATCCGAATGGATCCAATTTTTCAAGGATGCTGGGATCCCCCCTGGGCTGGCAGTCAACTATGCAGTCTCCTTTGTAGACAACAGAATTCAGAAGAACATGTTAATGGACCTCAGTAAAGAGATCATGATGGACCTGGGTATCACCGACATGTGCAAAATGGCCACTGAAGCGATTTCATCAGGACAGACCAGCATCCAGGCAGAGTTGAGGAGGACTGCCAACACACCTGCCACACGCATGATTGCCAACAGCCTGAGCCGGGACTCCCCTCCCAACACACCTGTGCGTCGACCGGACAACAGGCTGTCCGTCACAGTGTCCAATAAACAGGCTGCCAAGAACACTAAAGCAGTGCAGTCCCGGCCAGCAGACGAGGGTCCAGCTGTCCCCGTGAAGCGGCGGCGAGTTACAGCAGAGATGGAGGGCAAGTACATCATCAACATGCCAAAGGGCACCACCCCCCGTACAAGGAAGATCCTGGAGGAGCAGGCTGAGAGAGAGAAGGGCCAACATCGCACCTCAGTGTTCGAGAGGCTGGGTGCTGAGTCCAAAGCTGACACCACAACGGGGAGCAAGCCCACTGGAGTGTTCAGCCGGCTGGGGGGAGCCTCTGAGCCACGCCAGACTGGTACCACCGAGAAGGAGGACGGGGGGCGGGACTCTGACAAGCTGGAGGAGAGCGACGAGGAGGGCTCAGTGCTGCAGTACGCCGGCGTCCTGAAAAAGACGTCCCAGTCGTTAAAAAGAGCGGCCTCCTCCACCCAGGCGCCCAAACCCCAGACTGCTGGCCTTGCTAAGCCCGGCCCGGTCACCCTACGTCGCCTGGGCAAGCCCTCCAGCGCCCCAgcctcctccacctcccagGAGCCACCCGCCAAAGTCAGCATCCTCCAGAGGCTGGGCAAGTCCTCCGTCCATCAGCCCGACACCCAGGACAGCCGGGTCACCAGCACCAAGAGCAAAGGGTTCTCTGTTACCCTGAAGAGACCCGTGCCCAGCGTCAAGGTCAGCAGCAGCACAGGGGAGTGCCAGGGCGCTCAGATGGACAATGCGGGAACAGTCAGTGTGTTCAGGAGGCTGGGCACCAAGAAAACCTAACCCACTCCCCACTCCGGCCTTCACCACTTTCACCTCTGTTTTACAAGTGTGGGTTTTTATGTATCAGAGCCCAGTCGTGGACTCCAGAGTTGAACCCTTGGTGCTGCCATGAAGTGCATATCTCGGCGAAAGAGATGGcctactgtgtttttgttttattttatttttaatctgtaggGGCGCACACTCCACAGTTGATatcccctctcctccctcggCCCTCCCTATCCATTCACTGATGAGAGGAATATGGGTTGGTTTATTTATCATTGCAAAGCCAGGCTTGAAAATACCTGAGTGCACGTCTTTTTAACCGGtatgtaaaaagaaagaattgGTATTGATACAGATctaagttttattttaacttttttctttgtacaaTCAATTTAAACCCGTTATCTTTACAATACTTTGATATACTGTACAGCTCCTGAATCTATTTGCTGAACtgtatttaagtttttaaagtGTCATAATCAGATGTTGTCTTGCACTTGttcttagaaaaacaaaaacattgccGTCCTTTGTCCTTTTCTTCAGTTATTTCTGCTTTTTGCTCTGCTTCTTTTTAAGCCTTGTTCTGTGTTTATAGATAGGGTGATATCAGTTTGATCCTCATCATAACAAAATGACTCACATCTCCAATACTGCGAAGACTTTACTGTTCTTCTGAAACAATTGTCttgtgtaattattaatatcCGAATGGGCATTTCAGATGTTCATTAGGTGTAATGAGTGATGggcaaggtttaaaaaaaaaaaaaaaaaaatgtagttctCAACTGGTCAGGACCCACATTTGTCCTTGGTCATTAATTCACGAcccaaaaataatttaatttccgaaccattgtaatttattgtgcAAAATGATTAGTGCAGTAATCCACAATATCTATATGCACAGttcaaaacatgaaacaaagtGCCACAAGGGCTCTTCACAAAATGAATAGTGCAGTAATCACAGTGCCTTCATGCActgataaaaacattaaacaaatgcaagtgCAACAAGGGCTGAAACAcccaatgaaataaaaacccATTGAAACATATGAAACTAGATCTTGGGTCTCCAAAACTCTGCTTTTCTAATCTACAGAAATGGTAATCGGCCTATCTTGAATAACAGGCTGGCCATGCTTAggcatatgtttttttatatatgaaaacaatttTCTTTGAAGAAGAGAAATGGGGGTTTGCAGAGCTTAATTACAAGTTGTAATGCACTGCTTTGAACTAATGGAAAAACTGTGGATGCTTTTTGCTCCTGATCCGTGTCTCAAAGTCTGGGGTGATGGTAGACAAAGCAACTCCATGGTCGTGTTCTATGTCTATTCTGTTCCTAGCTTTTGTCTTCAGCTAGGCCAGAGCTGAGCAGCCGCTCTCACAAAGACAAAGTTGTGCTGAATGGTAGGATGATTTTGATTGCATGGGTGGCGATGGAGGGATACTCAGTCACCGCACTACACCAGCACTGAGAGCTTTacctctcttttttctttttcagtgtcCTATCACATGAGCTTCAGCAGCTGACTCTCTTTGGTGCTTGGCAACATGACACTTTCCATCTTGATTCCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55832 lncRNA upstream 194769 32837315 ~ 32837843 (+) True G44790
TU55810 lncRNA upstream 274232 32756738 ~ 32758380 (+) True G44769
TU55784 lncRNA upstream 376910 32655503 ~ 32655702 (+) True G44747
TU55727 lncRNA upstream 488936 32542635 ~ 32543676 (+) True G44702
TU55639 lncRNA upstream 634453 32396854 ~ 32398159 (+) False AMCG00013477
TU55923 lncRNA downstream 38374 33083728 ~ 33088760 (+) True G44860
TU55924 lncRNA downstream 43462 33088816 ~ 33090427 (+) True G44861
TU55928 lncRNA downstream 48948 33094302 ~ 33095508 (+) True G44865
TU55930 lncRNA downstream 55120 33100474 ~ 33100687 (+) True G44867
TU55931 lncRNA downstream 57285 33102639 ~ 33102873 (+) True G44868
AMCG00013501 mRNA upstream 10812 33015315 ~ 33021800 (+) True AMCG00013501
AMCG00013502 mRNA upstream 36528 32977931 ~ 32996084 (+) True AMCG00013502
AMCG00013499 mRNA upstream 68670 32951315 ~ 32963942 (+) True AMCG00013499
AMCG00013498 mRNA upstream 84899 32927816 ~ 32947713 (+) True AMCG00013498
AMCG00013500 mRNA upstream 115096 32888154 ~ 32917516 (+) True AMCG00013500
AMCG00013505 mRNA downstream 11407 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013503 mRNA downstream 35383 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013509 mRNA downstream 147281 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013510 mRNA downstream 227372 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013512 mRNA downstream 283957 33329311 ~ 33347695 (+) True AMCG00013512
TU55641 other upstream 602725 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 602725 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 749113 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1120811 31904968 ~ 31911801 (+) True AMCG00013468
TU55261 other upstream 2255443 30776851 ~ 30777169 (+) True G44325
TU55933 other downstream 60938 33106292 ~ 33106595 (+) True G44870
TU55990 other downstream 331166 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 397040 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 650238 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 1069319 34114673 ~ 34114939 (+) True G45072

Expression Profile