RNA id: AMCG00013508


Basic Information

Item Value
RNA id AMCG00013508
length 900
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00013508
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33121972 ~ 33122871 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCAATCCGTCAGTAAAATGAGCTGCGGCTCATCCCAGTCCCCCTGCTCTAACTGTGGCTGTGGACCGGCACGTGGGGAGGGCCCCCACTCAGGGGGGGCGGAGAACGGCAGCTGGAATTCTTCTACGCTTTCGTCCAGCTCCCCGGACTGCAGCCACCACCCCCCCGCCGGGAACCCCTTCTGGACAGCAGTGTTCGACTACGAGGCCACGGCGGATGAGGAGCTGACGCTACGGCGAGGGGACGTGCTTGAGGTGCTCTCCAAGGACTCCAAGGTATCCGGTGACGAGGGCTGGTGGACGGGCAAGATCAAGGACAAAGTGGGCATCTTCCCCAGCAACTACGTGACCCGTGACCCCAACTACACCAAGATCCAGGGCTCCCTGCTACGTGAGTGCCCTGTGCCATTGGAAATCGACTTCTCCCAGCTGCGCCTGGAGGAGATCATTGGCGCTGGTGGCTTTGGGAAGGTGTACAAGGGTGTGTGGGGCGGCGAGGAGGTGGCAGTCAAGGCGGCCCGGCAGGACCCTGACGAGGACATCAGCGTCACGGCTGAGAACGTGCGCCAGGAGGCCCGGCTCTTTTGGATGCTACGGCACCCCAACATCATCGCGCTGCGGGGCGTCTGCATGAGGGAGCCCAACCTGTGCCTGGTGATGGAGTACGCCCGGGGGGGAGCCCTGAACCGTGCACTAGCCGGCAAGAAAGTGCCCCCCCGTGTGTTGGTCAACTGGGCCGTGCAGATCGCCACCGGTATGAACTACCTGCACAACGAGACCATCGTGCCCATCATCCACCGAGACCTCAAGTCCAGCAACAGTGAGTACCGCAAATTCCCCCACTCCAGGTCCCGCCGTGCAGTACATCACACTCCGCTGAGAATAGGCAGTGTGTAG

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0005524 ATP binding molecular_function
GO:0004709 MAP kinase kinase kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55935 lncRNA downstream 26554 33094397 ~ 33095418 (-) True G44872
TU55927 lncRNA downstream 31525 33088902 ~ 33090447 (-) True G44864
TU55925 lncRNA downstream 65109 33056653 ~ 33056863 (-) True G44862
TU55904 lncRNA downstream 90717 33028267 ~ 33031255 (-) True G44848
TU55871 lncRNA downstream 183799 32934067 ~ 32938173 (-) True G44815
TU56003 lncRNA upstream 220138 33343009 ~ 33348520 (-) True G44936
TU56007 lncRNA upstream 292662 33415533 ~ 33416219 (-) True G44940
TU56008 lncRNA upstream 293425 33416296 ~ 33422111 (-) True G44941
TU56054 lncRNA upstream 345978 33468849 ~ 33472231 (-) False AMCG00013518
TU56076 lncRNA upstream 465719 33588590 ~ 33590089 (-) True G44995
AMCG00013507 mRNA downstream 13476 33096639 ~ 33108496 (-) True AMCG00013507
AMCG00013496 mRNA downstream 285374 32833847 ~ 32836598 (-) True AMCG00013496
AMCG00013488 mRNA downstream 494068 32622153 ~ 32627904 (-) True AMCG00013488
AMCG00013489 mRNA downstream 501034 32609881 ~ 32620938 (-) True AMCG00013489
AMCG00013483 mRNA downstream 540669 32572426 ~ 32581303 (-) True AMCG00013483
AMCG00013506 mRNA upstream 7183 33130054 ~ 33143388 (-) True AMCG00013506
AMCG00013511 mRNA upstream 123293 33246164 ~ 33263876 (-) True AMCG00013511
AMCG00013513 mRNA upstream 231710 33354581 ~ 33366875 (-) True AMCG00013513
AMCG00013517 mRNA upstream 306234 33429105 ~ 33440936 (-) True AMCG00013517
AMCG00013518 mRNA upstream 345989 33468860 ~ 33501747 (-) True AMCG00013518
TU55769 other downstream 498054 32622181 ~ 32623918 (-) False AMCG00013488
TU55745 other downstream 554020 32565760 ~ 32567952 (-) True G44719
TU55173 other downstream 2635641 30483519 ~ 30486331 (-) True AMCG00013411
TU56122 other upstream 555353 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 569973 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 3836306 36959177 ~ 36959914 (-) True G45468
TU56784 other upstream 4007987 37130858 ~ 37133244 (-) True G45571
TU56785 other upstream 4007987 37130858 ~ 37223824 (-) False G45571

Expression Profile