RNA id: AMCG00013512


Basic Information

Item Value
RNA id AMCG00013512
length 5840
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00013512
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33329311 ~ 33347695 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTGCGCAGTCCTGATGGAAGCTGATGTCTACCACAGGGAAGAGAAACGGGCCTGTGACAGGGATCCCGAAATGAACAAGCTGCGACAAAGCCTGCGCAGAAAGAAGCCCTCCTATGTCCCCGAGGCCAGCCGACCACACCAGTGGCAGGCAGATGAGGAGGCCGTGCGCAAGGGCAAATGCAATTTCCCTGTGCGGtACTTGGGCCATGTGGAAGTGGACGAGTCCAGAGGCATGCATGTCTGTGAAGAGGCTGTGAAGAAACTCAAAGTTAGCGGGAAGAAGTCTGTTAAGGCGGTGCTGTGGGTGTCGGCAGACGGCCTGAGAGTGGTGGACGACAAAACCAAGGACCTGATCGTGGACCAAACCATCGAGAAGGTGTCCTTCTGCGCGCCCGACCGCAACTACGACAAGGCCTTCTCCTACATCTGCCGCGACGGCACCACCCGCCGCTGGATCTGCCACTGCTTCATGGCCCTCAAGGATTCGGGGGAGCGCCTGAGCCACGCGGTGGGCTGTGCGTTTGCCGCCTGCCTGGAGAGGAAGCAGCGGCGGGAGAAGGAGTGTGGGGTCACAGCCTCCTTTGACGCCAGCCGCACCTCCTTCGTGCGCGAGGGCTCCTTCAGGGTTACCTCCGCCAGCCAGCAGGCCGACCGCGAGGATGTCATGAAACAGCTGCAGGAGAAGAAGAAAGCAGAGACTCCCGTGGCCATCCCCGCCATTCCCCCTGGCGCCGCCTCCCCCCCTGAGGGCGCCGCCTCCCCTGTGGACAAGGCAGAGCCAGGGGGCCAGCATGCCATCCCCCGCCGCCATGCGCCCATCGAGCAGCTGGTGCGCCAGGGCTCCTTCCGGGGCTTCCCTGCCCTGAGCCAGAAGAACTCCCCCTTCAAGAGACAGCTGTCCCTGCGGCTCAACGACCTGCCCTCCACCCTGCAGCGCAAGACGGACTTCCAGGCCAAAAACCCTGTGCCCGAGATGGACACTTCGGCGATGCCCGGCGAGGCGGACAGCATCAACGCCCTATGCTGCCAGATCAACACCTCCTTTACCAAGCCCTCTGAGGACCCCTTTTCCACGGCCACCTCCAACGGCATCCCAGCCTCCATGGCACCCCCCACCCTGCCTCCCCCTCCTGCACCCCCACAAGGTACGACCACATGGGCACAGAGCGAGCCCCCCACCCagtctccaccccccttccaAGGCGGGCACAAGCGGACGCCCTCAGAGGCCGAGCGCTGGCTGGAGGAGGTGGCGAAGGCGGTCAaagcccagcagcagcagcaacaaccacagcagcagcaagcaCAGCTGCCCCAAGCCATGTCCGCTGTGCCCATGTCCCTGCCCTCGGCCATGCAGCCCTTCCCCATGGCCTTCGATGCCACCCCAGCACCAGTGGGCATGTATGCCCCCCCGCCCCTGCAGCCCGCCTTTGTGCCCATGCCGACCTACATGCCAGCCCTGGCCAACAGCATGACCTACCCCAATGCCAGCGTCCCTGTGGTGGGCATCACGCCCTCCCAGATGGTGGCCAATGTTTTCTGCACGGCGGCAGCCTCAGGGGCACCCACAGCCGGGGGGGTGGGCAAGATGGGAGGGCACAGCTTCACCACCCCCGGCTTCACGGTCGGCCCCTACCACAACCCCGCCGCCCTCAACGGCatgccccccatcccccccatgCCCGCACCTATGGCCACTGCCACACAGAATGGCACCACAAACGGGACGAGCACAGGCTGGCCCTTGGAGGCCCGGCAGCTGGCAGGCGCATCCGGGGACGCACAGGAGGCCGATCGTTTCGAGGCTCAGTGGGCAGCACTGGAGTCCAAAACCCAGCAGAAAGCAGCGAACCCCTTCTCTAACGACctgcagaaaacatttgagATCGAGCTTTAACTGAGCCCCAGGCCGGCTGTACGGACTGCGACACAGACACAGCGCAGACAAGACTGAACCACTCTGCTTTACGTTACGTTACATTTTTATTGGGAGTTTTTATTTCCGTTCATTGCttcctttctgtctgtcttcctgtctgtcttttttcattccttttttctttaatttttcttGGCTGAACCACTCCTCTCCCCCCCGCTCCCTACACTCCACTGTacgaacaaaacaaaccatccCTTCTCCCCCCTACCTACTCGAACCccaaaaacatgaagaaagacTAACTGATCCTTATGTCTTCTGGATACACTTCATCTCAGATTGTGGATGCCAGCGCTCTGACCTGTAACCTTAAACACTCCATTTTCATGTCTGTGACACcgtgaagacaaaacaaaacaactgagGTTAGCATTCTTCTTCTGCGACAAGAGGCCATATTTTGAATCCTAAAACATCCCGCCTAATGGCCACGGCCTGCTTCACAACAGGGTGATGATCTCAAGGCAAGAAGCATTAAAGCTGAAGCACAAGTTAAAAGAAAAGGCTGATCAAGGAATTAAGgggaacaaaatgtatttacaggAAGTGTGCTATTTAAAGGGGTAACAAAATAAGTCAATCTGCCATTTACTTCCCTTCCTTTCCCTAATTCacttcttgtttctttttgtaaaagaagggggggaaaaacaacatgCTTTTTCAACATGGCAAAACTGCCCAAGCCATGCCGGGGTTTGGGTGGGCAGTTGGCTCTACCCTGCAGCTGGTAATTATGGTCTGCCATTTCTATGCCCTCCAGTGTTGTGAAAAGAGGCCTGACAGCACATGCGTAGGAAAGCAcacgtgtgagtgtgtgttcagTTGTTCAGGTTCTCAAAGATCAAGGTGGATGTACTTCAACAAGTCAGATTGTATTTGCATCAAGATTTCAAGTGAAGCCTATTGCCGTTCATGTTCATCTTTTAGCCTTCCCCgtaatagaaaatattttgtagcaCCATGAAAATGATGTATGTGATGTGCTTTAATTTGCAATCGGCTGTTATCATCACTTGAAATCAGCAATTGTTTTCCCAAATCTACACTGGGATAAATCTTTTGATCTTCAACCTGACTGAATGCTGTACTTCTGAACTAATCTGGGGGAGCTGAAGGCCTGTGTTATCTCcttctaaaacacacacacacttcctagGCATGTGCTAGCCAAGACAATCCCCTCTCTTCATTGCAGTCCACAATGTTAGCAGTGGATCCTCACAGAGCCACATCATGATAGGCCCTAGGCCTGTCTAACCATCCCATGTAGGCTGTGGAAGTGTGTGCAGGtttgtcatgcttttttttttggtttgcttttccaAATTACCCTTAAACCAAGCTGTCAGGTGTCACATGCCGATCTGTCAGACTAGATTCAATAGTATGTGTGACGTGCTCCTAGCCTGTGCAGTCGACAAAGGGGGCTAGTTCACCAGCCATGTTATTTAGCGCTGGCCCTATTTTGGTAGTTTGTTGGTTTTGGTAAGGTGTCTAAGGCTAGTTCATACCAGTCCCTTTACCTTTCAGAGATGAATGGGAGGGGCTTGTGATGGATCTCGGTCTCTGTTGATGCTGGCGACCTTGATAGGGTCAGTGGTTGGGCACCAAAGTCAACTCCTATAAGTGGCATTCCTACGCCAAGCCTACACAATACAGATGGGTCAGTCTGCTCAAATTAAGGGAGGGAAAGAATTTGAGGTCACACAGAACAAGCaagcattttttgttgtttttaatggcagTGGTATTGCAGGTCAGCTTGGGTCAAAACCAATGCAGTTATCGCTCAAAACTATTTTTCAGTCAAACCCGATCAGACTTTGTATTGGATGACTGCGGGCTCAGGGCTCCTGGATATTAGGTTTATTGAGCCCTCTGTGACTGCTGAATcctgttgatgtatttatttattattagagAAGGAATTGACAGGGGAGGAGGCAGGCAGCAGGAGGAAAGTAGGGGGATGTGAGGTTGGGTTGGTTCCAGGCAGGTTGGAGTAGGTAGCAGGTGGCGGAAGTGCATGAGTGAGACGTTGGGAATATCTGATATATCTTGAGCTGCTCAGAGACTTAAGACAGACAGATCCATACAGTTTGCTctagctttgtttttcttttcgttGACCTATACAGCATACTATTCAGTGCACTTTTGGTTTGCagtcttgatttaaaaataaaaagattggaAACTGCAGCCAAGCCAAGACTCAAAAGTGAGGAAGTGTTTACCAATAGAGGAAGTTTTGCACTGACTGAAGGGAAGAACAGACCGAGGTAAGGTTTGAAGAGCAGAAGAGATGACGGGGGAGAGTTTAATAGTGATTGACACAGAGGGATCAAGCTAAAGGAGGCTCCCTCTAGTGTAACTCTTAGACAGGAGACTTCCTATTAGCCCAGCATCAGAGGCTATTAGATTTTGATGGAAATTAAGGGGTGGTCTGTATATCGGAGGAAGCTAGGGGCAGTGAGAAGAACAGTGTGGCAGGTGAGGGTGCAGGAAATGTAAAGGAAGTAGACAGATGGCATTGAATTACAGATTGGGTgcccaaaacaaaatgatattCTGTAATATTAGATGGAAACTGAGAATGATTAGCATTATCTTTATTACAACCCCCTGCGTGAGCACTACCATTGGTTGCCCATTCCCACGGACCCGTCTGTTTCTATGCCCATCGGTGACTGACCATGTGTTTCCTGACAGACTTTTTGCCTTTTTCTGCAGCATGTTAGTGTTTTGTGATGGGAGactaaccaaccaatcagatCCATTCAAATTGGAGACCATAAGTGGGTTTGCACCCAAAGATGACGGATGTGACACAGCTGGTGAACTGACTCAACAAACATCCTTGCCAACTCGTATAGCTGTTTAATAGTAGAGtggttgtttttataataatttattttgttttgtaattttatctttatttttattttgtttagtgaCAGATTTACATTACTCTGGTCCAGataattaaaagacaaacatcaAACCTGTTTCCTTCTCCTGTAAAGACATCAGGGATCAAGCCTGTTGACTCAGTGGGTCCTTTTCCTTTgagaaaccaaaagaaaaagatttttAGCTGGGAGTGACTGGCATTACTGAGGAGTGATGTTGCTTGAGCTTGACTATAGAAAGGCCTCAGATTCTATagtgtatgttttaaattggATGGAGGTGAAGGaagagttatttttattttgctttgaaatttTAGCAGTGTGTTAATATACAACCTAAGGAAGTATTTTGGCCAATTACGAGGCGTCGCTGTGTTTGAAACGTGAGGTACAGTACAACGCATGGTTAGGCCCATATACTACTGTATTGGGGGAGCTGTATGACTCCACTGCTTTGTGATGCCTAGTGGACACAGACAATGCagcttttcaattaaacaagGAGATTTCAAACCTCTGCAGAGTAAAGAAAGGTCCACAAAAATGGTCAAAGAATGAGTTAAATATGTGACGTGAtagaaaccaaaccaaatggGGAATAAAAATATCTGGTTAGTACAATAACTTGGCCTGTGAGTTGATACCAGGACTAGTCGAGGGTCACCCCACTCAGTGAGACTGAATTGCAGCCTAACTGGAGATTACTTTTTCGAGAATAAGTACAGGAAAAGGATGACTTTCCGCCAAGTCATcgaatttattttcttaaattgtaagagcataatgtgatttaaaacaagaaaaaaaaaatccatcataGCCAGTTCCGTTACACATAAATTCAAAACATGACAGGAATACCTTTTGTGTTTCTCGAGCTGCGGCCCAATGTTGCAGACCAGCCAGGATCCAAAAATGGTACTTCtggtttgttttcctccttgcgtGTTATCAGCACATGTTGGTCACCTT

Function

GO:

id name namespace
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06057 NUMBL; numb

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55934 lncRNA upstream 203862 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 225919 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 226438 33102639 ~ 33102873 (+) True G44868
TU55930 lncRNA upstream 228624 33100474 ~ 33100687 (+) True G44867
TU55928 lncRNA upstream 233803 33094302 ~ 33095508 (+) True G44865
TU56025 lncRNA downstream 92140 33439835 ~ 33441164 (+) True G44954
TU56062 lncRNA downstream 185077 33532772 ~ 33533155 (+) True G44983
TU56191 lncRNA downstream 1585511 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1703162 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1772384 35120079 ~ 35120344 (+) True G45124
AMCG00013510 mRNA upstream 44333 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013509 mRNA upstream 89686 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013503 mRNA upstream 245900 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013505 mRNA upstream 268031 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013504 mRNA upstream 283957 33032612 ~ 33045354 (+) True AMCG00013504
AMCG00013515 mRNA downstream 37422 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013516 mRNA downstream 95099 33442794 ~ 33449093 (+) True AMCG00013516
AMCG00013514 mRNA downstream 104322 33452017 ~ 33464680 (+) True AMCG00013514
AMCG00013520 mRNA downstream 169460 33517155 ~ 33521234 (+) True AMCG00013520
AMCG00013519 mRNA downstream 189524 33537219 ~ 33538322 (+) True AMCG00013519
TU55933 other upstream 222716 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 899424 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 899424 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 1045812 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1417510 31904968 ~ 31911801 (+) True AMCG00013468
TU55990 other downstream 28825 33376520 ~ 33394148 (+) False AMCG00013515
TU56031 other downstream 94699 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 347897 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 766978 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1987195 35334890 ~ 35338052 (+) True G45174

Expression Profile