RNA id: TU55990



Basic Information


Item Value
RNA id TU55990
length 360
RNA type TUCP
GC content 0.57
exon number 4
gene id AMCG00013515
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33376520 ~ 33412841 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCGGGATCTGCAGTGTTACATTGTATTATACTATATCAAAATGGCCACAGTCATTCAAAACCCTCTGAAATCgcAATCCAGTGGGACAGTGATAAAAAACAGCCTGGGCGAGGAGTTCTACCGCGAGGCCATCGAGCACTGCCGCAGCTACAATGCCCGGCTGTGCGCTGAGCGCTCCATGCGGCTGCCATTCTTGGACTCCCAGACCGGCGTCGCCCAGAGCAACTGCTACATCTGGATGGAGAAGACCCACCGAGGGCCAGGGTTGGCACCAGGGCAGATCTACACCTACCCAGCCCGCTGCTGGCGCAAGAAGAGACGGCTAAACATCTTGGAGGACCCGCGGCTCAGACCCTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55934 lncRNA upstream 251071 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 273128 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 273647 33102639 ~ 33102873 (+) True G44868
TU55930 lncRNA upstream 275833 33100474 ~ 33100687 (+) True G44867
TU55928 lncRNA upstream 281012 33094302 ~ 33095508 (+) True G44865
TU56025 lncRNA downstream 45687 33439835 ~ 33441164 (+) True G44954
TU56062 lncRNA downstream 138624 33532772 ~ 33533155 (+) True G44983
TU56191 lncRNA downstream 1539058 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1656709 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1725931 35120079 ~ 35120344 (+) True G45124
AMCG00013512 mRNA upstream 28825 33329311 ~ 33347695 (+) True AMCG00013512
AMCG00013510 mRNA upstream 91542 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013509 mRNA upstream 136895 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013503 mRNA upstream 293109 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013505 mRNA upstream 315240 33056761 ~ 33061280 (+) True AMCG00013505
AMCG00013516 mRNA downstream 48646 33442794 ~ 33449093 (+) True AMCG00013516
AMCG00013514 mRNA downstream 57869 33452017 ~ 33464680 (+) True AMCG00013514
AMCG00013520 mRNA downstream 123007 33517155 ~ 33521234 (+) True AMCG00013520
AMCG00013519 mRNA downstream 143071 33537219 ~ 33538322 (+) True AMCG00013519
AMCG00013523 mRNA downstream 188406 33582554 ~ 33585179 (+) True AMCG00013523
TU55933 other upstream 269925 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 946633 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 946633 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 1093021 32273268 ~ 32283499 (+) False AMCG00013473
TU55551 other upstream 1464719 31904968 ~ 31911801 (+) True AMCG00013468
TU56031 other downstream 48246 33442394 ~ 33446921 (+) False AMCG00013516
TU56113 other downstream 301444 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 720525 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1940742 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 2261154 35655302 ~ 35659833 (+) True G45209

Expression Profile