RNA id: TU56031



Basic Information


Item Value
RNA id TU56031
length 503
RNA type TUCP
GC content 0.55
exon number 6
gene id AMCG00013516
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33442394 ~ 33449093 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTGCTGTACGCCCAGCTCAGAGGCCAGtgtgatAGCGCTGCAGTGGGCTCAGCTCATATTCAGTACACTCTGGGAGGGCAGTCCTTCACGAAAGAAGTGAGCTTCAGTCTCAAGCCTCAGAAGGACTCTGGGCTGGCTCTGCATAGACTCCACGCTCGCGCTGTGATTCGCTCCATGGAGAAGCAGCATGACTACTGGAGTGACTATTTCAGAGATCAAAGGAAGGTGCAGGAGCTGGTGGGGCTGAGCTTTGACTCTGGAGTGGCCTGTGTGATCACTGACTACATCACCGTCCAACGAGACACCAAGAAACCCGTGGAAGGGTTGTCACCCATCAAAACTTTTCAGTCCTATGCCCGCTGGACATGTGAAGGAGTCGCGTGTTCTTTTGAAGAGAAGGTGGAAGACTGGCTGCCAGATGAAGCTGCCCGGGCGGAAGAGAGCTCCCTGCTGAAGCTCGTCACTCTTCAGAAGGCCGATGGCTCCTGGACCGTGGACGNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56025 lncRNA upstream 1230 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 316945 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 339002 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 339521 33102639 ~ 33102873 (+) True G44868
TU55930 lncRNA upstream 341707 33100474 ~ 33100687 (+) True G44867
TU56062 lncRNA downstream 85851 33532772 ~ 33533155 (+) True G44983
TU56191 lncRNA downstream 1486285 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1603936 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1673158 35120079 ~ 35120344 (+) True G45124
TU56236 lncRNA downstream 1694501 35141422 ~ 35142529 (+) True G45129
AMCG00013515 mRNA upstream 29553 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013512 mRNA upstream 94699 33329311 ~ 33347695 (+) True AMCG00013512
AMCG00013510 mRNA upstream 157416 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013509 mRNA upstream 202769 33192635 ~ 33239625 (+) True AMCG00013509
AMCG00013503 mRNA upstream 358983 33080737 ~ 33083411 (+) True AMCG00013503
AMCG00013514 mRNA downstream 5096 33452017 ~ 33464680 (+) True AMCG00013514
AMCG00013520 mRNA downstream 70234 33517155 ~ 33521234 (+) True AMCG00013520
AMCG00013519 mRNA downstream 90298 33537219 ~ 33538322 (+) True AMCG00013519
AMCG00013523 mRNA downstream 135633 33582554 ~ 33585179 (+) True AMCG00013523
AMCG00013524 mRNA downstream 145289 33592210 ~ 33595459 (+) True AMCG00013524
TU55990 other upstream 48246 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 335799 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 1012507 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other upstream 1012507 32423276 ~ 32429887 (+) True AMCG00013478
TU55622 other upstream 1158895 32273268 ~ 32283499 (+) False AMCG00013473
TU56113 other downstream 248671 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 667752 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1887969 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 2208381 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 2891341 36338262 ~ 36370087 (+) True AMCG00013566

Expression Profile