RNA id: TU56054


Basic Information

Item Value
RNA id TU56054
length 2645
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00013518
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33468849 ~ 33501747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTACTCTAACCagcttctctcttcctccaATCACAGAGCTGAGAATCTGCCAGTCGTGCCTCACTTTGCCTGCCTGGTACCCGGATCTCATGGGGGATAGCTCAACGGCACCCTCTGCCTGCCAGTACCCTCTGGTCATTTCTCTGCATCGCCACCTACTGCTGTTTCACAGGgtgCACCGGCCACAGGTGAGGATGGAGAACTACCTGCTGGTGTGTGCATCTGGGAGGGAGCTCCTGGCGTGGTCTCGTCACTGCAGCACGGAGGTGTCTTGACGGGGGCCACAGAGCCACCCCTCCCCGGCCCCTCTCCTGGTCTGGAGGATCAGCCGCTAACAACCTCATGAGAGGTGTCGAATCCATTCCACGAGAAGCCACTGGGACCCTGAGATACTAAAAATCAACCAGGGGTGGGCACTGGACTGCAGTGGAGCCCAGGTCAGGAGGGCAGCATGGTGGAGGGAggaaaagggggagggggggcagccATCTTCCATAGCATCCCAGGGCAGCCAAACTGCAACCAACATCGGCTGACCCCCAGCTGGCAAACTATCAGCCTCTCTTTATACTTGATAggcacaaaaaaactaaaattaaaatcacaaaattcAAAAGCACCTAGTTCTTCTAGGGGTGATTCATAAGCCAGCTGTATTAAGCATTCACACCTCAAGGGCTGTGGGTAACAGATCACAGGTCACACGGACCACGTCCCTCTGGCTTTTACTGTTAAGCCGCCCATAAAACTGGttgctgtgtctctgtctttgaGTGGATCAGTAATTTGGATTACGGCTCTCTTTTACCTCTCCTTAGTGGCTTTTAAGACAACTGGGTaaagtgggggtggggggagactCAATTTGTTCACACAGAACACATGGTAAAGCAGAGTATGTCAGCAGAAAGCATGACTCATCAACTGTCAGTCCAGGGTTATATCGTACCCACTTGTTCACAACAACTGCTCTGGTTGGCTGGGAGAGAGGGGGCCCTAGGGAGCAGAGCTGATGGAGGCTCTCTCTATTAAAGTGACAAAGATGCCAGAGAAGGCGAAAAAAGGGAGGGAAAAAGCTCCAGGTATcagccaaaacaaataaaaattaaaataaaataaatataaattacgCACACAGGTAACGGGTTAAAGCAGAGTATAGTAGCTGCTATGGTGGAGTTAAAGTAGAGAAATTAAATGATCCTCTATTCAGTACAAAGGTAGGGTGGAAAAGATCCATGGGGGTTCACAAGGAGTATGGGAGTGAAAGTCAGATATCATGGCTCTCTGtaacaggcaggcaggcaggtagGCAAAACCAAGTAAAGTCAGAGACAGACCAGCAGAGATAGAACCAAGTTAGACCAGAGTGGCTGGGGTTGGTTGGGTTTGTGCTCCCTCCTCCAGGGATCGTATAGCTCCACAACAGCCCCTGCTTATGATGCGCTATATCAGAATCACTGGGTGAACGAGGAGAGGATCTGGGCTTGGCAGGGAAGGCCCCATCTGCCTCGTGTCCTTCACGCAGAACTGGAGTAAAGGCCGAGATTAGCGTTAACACGTGCTAAATGGATTAAACTTCATTTATTCAATTCTACTGCAGCAGGAATCAATGAACACTCATGAAAAGAAAGAGCAAAAAGTTGGGATGTTTCCAAAAGGGGTGTCCACTGGGGAGAGTGGTCATGAACTTCAGTGCACCGTGGTAGCTGTTCTCACTTTCACAAGGTTCCCCCACACCTACCCCATAATGATGGTCTTTGCACTACATCAGTGGCCGCCTGAGGTGTATGTTACTGTACTGACTGTATTCTCTTAGACAAGCCTTTGTATATGCATTGATACATTGCTGAGCTTACCACTCATGGAGTCTGTTGTCAGATCAATAGCCCCCCGGCCTAGAGTGCCAAGGACGGAGAGAGAAGTGCACTACCTTGTGAAATATGAATACCCCAGTCAATAAGGGCCTCAGTGCAGCCTTGAATGTTACAGTGTTAAAAAGCTGGAGTCTGTATAATAGTCCACTGTGTTTTAATGCACATCTTCATTTGTTTGATCTGTGTGATGCTTGGTGGTCGTTTTTGGTTTGGATGTACGAACTCCAtcccccaccaaaaaaacaaacaaacaaaaaaaataacctgGTTTCAAATGGAGGAGTTAGGAAAGTAAAcagtcaaatttaaaataactgtggTATGAAACCCAGATTACAAGGGCTGGGCATATTAACCTGATATATGAATACTGGGGATACAGAGATTTCTTTGCCAgggctaaaaaataaaaaatatgcacCAACATGTTTACTGTAAGAGTGCTGCAGGAAAGGGGGGTTTATTCTTCCCTACGTGTTGCTATATCTCTGTAAGTAGCACGCCCAGTGTCTGTCTTGGCCTGTTACAGATCCCCACAAATTGACATACAATCTGTACAAGACTAAGCTGGCAGGCCCATGCATGGTGAGCACAGCCAGTGTGTGAATGAAAACTGTGCAATATTCAAGATAGGAATGCATGACAGACACAATTTTACAGTTATCtaataataaaagttaatatattgtgaattttagttgtttttttagggATATTTTATAAGAGAAAGCCATATGTATGTTGATTACTGCTCacttatgatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56008 lncRNA downstream 46738 33416296 ~ 33422111 (-) True G44941
TU56007 lncRNA downstream 52630 33415533 ~ 33416219 (-) True G44940
TU56003 lncRNA downstream 120329 33343009 ~ 33348520 (-) True G44936
TU55935 lncRNA downstream 373431 33094397 ~ 33095418 (-) True G44872
TU55927 lncRNA downstream 378402 33088902 ~ 33090447 (-) True G44864
TU56076 lncRNA upstream 116359 33588590 ~ 33590089 (-) True G44995
TU56089 lncRNA upstream 143177 33615408 ~ 33615642 (-) True G45007
TU56092 lncRNA upstream 149221 33621452 ~ 33621738 (-) True G45010
TU56120 lncRNA upstream 198512 33670743 ~ 33671683 (-) True G45035
TU56123 lncRNA upstream 210592 33682823 ~ 33683081 (-) True G45038
AMCG00013517 mRNA downstream 27913 33429105 ~ 33440936 (-) True AMCG00013517
AMCG00013513 mRNA downstream 101974 33354581 ~ 33366875 (-) True AMCG00013513
AMCG00013511 mRNA downstream 204973 33246164 ~ 33263876 (-) True AMCG00013511
AMCG00013506 mRNA downstream 325461 33130054 ~ 33143388 (-) True AMCG00013506
AMCG00013508 mRNA downstream 345978 33121972 ~ 33122871 (-) True AMCG00013508
AMCG00013527 mRNA upstream 84800 33557031 ~ 33576604 (-) True AMCG00013527
AMCG00013528 mRNA upstream 124099 33596330 ~ 33609620 (-) True AMCG00013528
AMCG00013531 mRNA upstream 223331 33695562 ~ 33699712 (-) False AMCG00013531
AMCG00013534 mRNA upstream 1060199 34532430 ~ 34544065 (-) True AMCG00013534
AMCG00013535 mRNA upstream 1071846 34544077 ~ 34648703 (-) True AMCG00013535
TU55769 other downstream 844931 32622181 ~ 32623918 (-) False AMCG00013488
TU55745 other downstream 900897 32565760 ~ 32567952 (-) True G44719
TU55173 other downstream 2982518 30483519 ~ 30486331 (-) True AMCG00013411
TU56122 other upstream 205993 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 220613 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 3486946 36959177 ~ 36959914 (-) True G45468
TU56784 other upstream 3658627 37130858 ~ 37133244 (-) True G45571
TU56785 other upstream 3658627 37130858 ~ 37223824 (-) False G45571

Expression Profile