RNA id: AMCG00013520


Basic Information

Item Value
RNA id AMCG00013520
length 276
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00013520
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33517155 ~ 33521234 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGGCAGAGTCCCAGAGGAAAGTGGACAGACTGCCCTTCCAGATATTCCCAGACCCTGTGGAGGTGGTGCTGTCCCCGGGGAGCCTGGGCTGTGAGGCAGCCTGCATGCGCCAGAAGGAGCGGCTGCCCTCCATTGTGGTGGAGCCCACGGAGGTGAGCGAGGTGGAGAGCGGGGAGCTGCGCTGGCCCCCCGATGACCTGGGCTCCTTCGAGGAGGACGAGGACCTGTTCCTGGAGCAATTTCCACTCAGCAGTGGAATTCAAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56025 lncRNA upstream 75991 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 391706 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 413763 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 414282 33102639 ~ 33102873 (+) True G44868
TU55930 lncRNA upstream 416468 33100474 ~ 33100687 (+) True G44867
TU56062 lncRNA downstream 11538 33532772 ~ 33533155 (+) True G44983
TU56191 lncRNA downstream 1411972 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1529623 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1598845 35120079 ~ 35120344 (+) True G45124
TU56236 lncRNA downstream 1620188 35141422 ~ 35142529 (+) True G45129
AMCG00013514 mRNA upstream 52475 33452017 ~ 33464680 (+) True AMCG00013514
AMCG00013516 mRNA upstream 68062 33442794 ~ 33449093 (+) True AMCG00013516
AMCG00013515 mRNA upstream 104314 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013512 mRNA upstream 169460 33329311 ~ 33347695 (+) True AMCG00013512
AMCG00013510 mRNA upstream 232177 33272726 ~ 33284978 (+) True AMCG00013510
AMCG00013519 mRNA downstream 15985 33537219 ~ 33538322 (+) True AMCG00013519
AMCG00013523 mRNA downstream 61320 33582554 ~ 33585179 (+) True AMCG00013523
AMCG00013524 mRNA downstream 70976 33592210 ~ 33595459 (+) True AMCG00013524
AMCG00013522 mRNA downstream 88933 33610167 ~ 33613789 (+) True AMCG00013522
AMCG00013529 mRNA downstream 97066 33618300 ~ 33619481 (+) True AMCG00013529
TU56031 other upstream 70234 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 123007 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 410560 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 1087268 32423276 ~ 32429887 (+) False AMCG00013478
TU56113 other downstream 174358 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 593439 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1813656 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 2134068 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 2817028 36338262 ~ 36370087 (+) True AMCG00013566

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU302637 False 268 lncRNA 0.45 2 NC_053133.1 27364695 ~ 27365071 (-)
tiger barb (Puntius tetrazona) TU141839 True 500 lncRNA 0.52 2 NC_056711.1 22465146 ~ 22471340 (-)
mexican tetra (Astyanax mexicanus) TU302637 True 2990 lncRNA 0.39 2 NC_035921.1 41158683 ~ 41161715 (+)