RNA id: AMCG00013522


Basic Information

Item Value
RNA id AMCG00013522
length 2294
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00013522
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33610167 ~ 33613789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTGGCTCGCAGGTGCCGGCGCGGCCTGTCCTCGCATCGCGCCGCGGCGCCGGTGGGGTGCTGTGCGGCCCCTGCAGCGGGAGCCCATGTCGCAGCCGGCGGGACGGGCCATCATTCACCACACCGCCCTGTCCCAGTGCCACAGCCCGGACTCCTGCGCCCAGGAGCTGCGGGACATCCAGAGCCTGCACATGCGGCACAGGGGCTTCGACGACATCGGCTACAACTTCCTGATTGGAGGAGACGGCAGCGTGTACGAGGGCCGGGGCTGGGGCATCGTGGGAGCTCACGCCAAGATGCACAATAACAACTCGCTGGGCATCGCTCTGATGGGCCACTTCAGCCATCAGCCCCCGACCCCCGCTGCCCTTTCCTCTGCCCAGCAGCTGCTCGAATGCGGGGTGGCACTGGGGCACCTGCACCCAGACTACACCCTGAGCGGCCATCGTGACGTCCGCAACACAGAGTGTCCAGGGGACCAGCTTTACAGCGCCATGCGCCAGTTTGCCCACTTCCAACAGTGACCCCCACTACGCCAGTGCCACTGAAAAGAGTGCAGACTGGAGGGTAGTGCTCTCCATGGTGAAAGACTGctggaaatattattttttctttctgctcaGGTAAAAAAGCACCCATATTAATGGCACGGCAGCTATGAACGTTCAGCTACATCCACAGCTCCAGTTACTGACTGCCCTTCAAATAACACGGCAGACTAGAGCACCAGAGCACTAGAGCAAGACATACACACTGTTCCCTTCTGCACTGTGGTAGCCTGTCCTCTCTGGAGCGTTAAAGGTCTTCCTGTCGGCCGGGCCACTTTTGGTTGCACCTTGTAGGACTTCAGACCTGGGTCAGAGGAAGTGGGGAAGAATCTCATGGTTGTGACTTCAGTGCTCTGGGCTGCCCTGCCACCTCAATTTTTCTTCCTCGTCTCATCTTCTGCCAGTCAGCTCTGGGCGAGCCTCTATAGGAGGAAGTATGGTTTGTTGTCAACAGGAATTGTGCTAGTCATATAACAGTCTGTGCCCACAGTGACCAtcttccacccccaccccagcaGTTATCTTTCAGTCACCTTATACTTCAATGATAAAATAtcatttgtttagttatttttcccCTGCTGTGGAGGTATATTTGTTGAAATATGCATCTGATTCAGTCTGCCAGCCTGGTCTTATCACAGtgtctcaatcctggtcctggaaacCCCCTGCACTGCagattttactttattactagtagggtacttaattgaaccctaattgaactaataatttgcctaatctgagatcttaaattatgttaaacagTTGTAGAGTGCATCTTGAGTATGAAACTGTAGATGGAACAACTTTTTATGAGctaaaattaagcaaatgagTTCAATTGagggttcagttaagtaattgagagctcagtctGAATGAAAAGCACCAGCCCATGGATTCCCTGGATTAAGAACCAGTGGTCTGCACTAAGATGTCCATTATGTCACCTTTTCTGTTGACTGCATGGAAGCGTGTTTCACGGTGTTTTACCTGCGTATTAATCGCAAATGACTCGTGGCCTTTTGTATTTGTCAGTCTCTGTGggatcatacattttaaaagcaagaaTTTAATAATGACTAATTTTAATATGACTTGGTTTATGATGGCTACAGAGCCTTTTTGAGAAACTCGTCATAAACAAGACCAAATATGGGTTTACAGTTGTACAAGTTACCATTTATACGTTGTTCATAATTCACGTAGTTCATAGCTCTATGCTATGTTGGGCAATTTGCAATGGTGCTGGTTTTGtgctatatctatatatacatatatttgtatatataaatatttgtattatatcttCTCCGAAGGTGATGTATGCTGTATATATTTCCCTTATTgtgtaaaaattgaaaaaagggatatgttttgtattatttaaatttaagataGTACTGTAGTAGAAACGGGATCTATCCTGTACAAAGCAAGGTCAGAATAGTCGCTTTTTAGTATATGATTTGGCTCCACTAGAGAGAGACATAACGCCATCTACAGAGTCTATCGACCAAAAGAATAGTATAGAATCAGAACTGGTTTGAAAAGGCAATGCGATTATATTACACGGGATGATTTTGTgtagaatgtttattttaatgtacttttaagGTTACTTTGATTCCAGGCTTTTTAACGTAGTTTGTGAGACCTTTTAAAGTTATTGTCTTGCAAGAGCTcgcaaaacatttaatttaatttaattctttTCCTCTAATAAATACCTGATC

Function

GO: NA

KEGG:

id description
K01446 PGRP; peptidoglycan recognition protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56062 lncRNA upstream 77012 33532772 ~ 33533155 (+) True G44983
TU56025 lncRNA upstream 169003 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 484718 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 506775 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 507294 33102639 ~ 33102873 (+) True G44868
TU56191 lncRNA downstream 1319417 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1437068 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1506290 35120079 ~ 35120344 (+) True G45124
TU56236 lncRNA downstream 1527633 35141422 ~ 35142529 (+) True G45129
TU56242 lncRNA downstream 1561446 35175235 ~ 35175446 (+) True G45135
AMCG00013524 mRNA upstream 14708 33592210 ~ 33595459 (+) True AMCG00013524
AMCG00013523 mRNA upstream 24988 33582554 ~ 33585179 (+) True AMCG00013523
AMCG00013519 mRNA upstream 71845 33537219 ~ 33538322 (+) True AMCG00013519
AMCG00013520 mRNA upstream 88933 33517155 ~ 33521234 (+) True AMCG00013520
AMCG00013514 mRNA upstream 145487 33452017 ~ 33464680 (+) True AMCG00013514
AMCG00013529 mRNA downstream 4511 33618300 ~ 33619481 (+) True AMCG00013529
AMCG00013521 mRNA downstream 20950 33634739 ~ 33637208 (+) True AMCG00013521
AMCG00013525 mRNA downstream 34060 33647849 ~ 33661773 (+) True AMCG00013525
AMCG00013526 mRNA downstream 50288 33664077 ~ 33669293 (+) True AMCG00013526
AMCG00013530 mRNA downstream 56946 33670735 ~ 33693897 (+) True AMCG00013530
TU56031 other upstream 163246 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 216019 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 503572 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 1180280 32423276 ~ 32429887 (+) False AMCG00013478
TU56113 other downstream 81803 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 500884 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1721101 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 2041513 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 2724473 36338262 ~ 36370087 (+) True AMCG00013566

Expression Profile