RNA id: AMCG00013523


Basic Information

Item Value
RNA id AMCG00013523
length 891
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00013523
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33582554 ~ 33585179 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGGGAACAAAATAACACGGGATGACTTCGAGTGGGTCTACACGGAGCAGCCGCACTCGACCCGGAGGAAAGAAATTTTGGccAAGCACCCTGAGATCAAGTCCCTGATGGGGCCAGACCCCAATCTGAAGTGGGTCGTGACAGCCATGGTGCTCACCCAGTTCCTGGCCTGCTATCTGGTGCAGGACCTCTCCTGGAAGTGGGTGCTGTTCTGGGCCTACGCCTTTGGGGGCTGCATCAACCACTCCCTCACCCTGGCCATCCACGACATCTCGCACAACGTGGCCTTCGGCAACAAGGACGCCCGGTCGAATCGCCTGTTTGGCATGTTTGCCAACCTGCCCATTGGCCTGCCCTACTCAGTCAGCTTCAAGAAGTACCACGTCGACCACCACCGCTACCTGGGTGGCGATGGCCTGGATGTGGACATCCCCACGGAGCTGGAAGCCCGCCTGTTCTGCACCCCCTTCCGCAAGGTCATCTGGCTCTTCCTGCAGCCCTTGTTCTATGCCTTGCGCCCCCTCTGCGTCAACCCCAAGCCGCTGTCTCGCATGGAGCTGCTCAATGGCTTCGTCCAGCTCATCTATGACCTCATCATCTACCAGCTGTGGGGGCTCAAGCCCCTGGTTTACATGGTGGCCGGTTCCATCTTATGCATGGGCCTGCACCCCATCTCAGGCCACTTCATCGCAGAGCACTACATGTACCTGAAGGGCTACGAGACCTACTCCTATTATGGCCCCCTCAACTTGATCACCTTCAACGTGGGCTACCATATGGAGCACCACGACTTTCCCAGCATCCCCGGGAGCCGCCTACCTCAGGTAAGCCTTTGCCAAAGACCAACAAACAGCCTGATTTTGTCAACCTCCTACTACTGCTACTTCTAG

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56062 lncRNA upstream 49399 33532772 ~ 33533155 (+) True G44983
TU56025 lncRNA upstream 141390 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 457105 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 479162 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 479681 33102639 ~ 33102873 (+) True G44868
TU56191 lncRNA downstream 1348027 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 1465678 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1534900 35120079 ~ 35120344 (+) True G45124
TU56236 lncRNA downstream 1556243 35141422 ~ 35142529 (+) True G45129
TU56242 lncRNA downstream 1590056 35175235 ~ 35175446 (+) True G45135
AMCG00013519 mRNA upstream 44232 33537219 ~ 33538322 (+) True AMCG00013519
AMCG00013520 mRNA upstream 61320 33517155 ~ 33521234 (+) True AMCG00013520
AMCG00013514 mRNA upstream 117874 33452017 ~ 33464680 (+) True AMCG00013514
AMCG00013516 mRNA upstream 133461 33442794 ~ 33449093 (+) True AMCG00013516
AMCG00013515 mRNA upstream 169713 33385117 ~ 33412841 (+) True AMCG00013515
AMCG00013524 mRNA downstream 7031 33592210 ~ 33595459 (+) True AMCG00013524
AMCG00013522 mRNA downstream 24988 33610167 ~ 33613789 (+) True AMCG00013522
AMCG00013529 mRNA downstream 33121 33618300 ~ 33619481 (+) True AMCG00013529
AMCG00013521 mRNA downstream 49560 33634739 ~ 33637208 (+) True AMCG00013521
AMCG00013525 mRNA downstream 62670 33647849 ~ 33661773 (+) True AMCG00013525
TU56031 other upstream 135633 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 188406 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 475959 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 1152667 32423276 ~ 32429887 (+) False AMCG00013478
TU56113 other downstream 110413 33695592 ~ 33699545 (+) True G45029
TU56162 other downstream 529494 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1749711 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 2070123 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 2753083 36338262 ~ 36370087 (+) True AMCG00013566

Expression Profile