Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00013524 |
| length | 784 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 6 |
| gene id | AMCG00013524 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 33592210 ~ 33595459 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K03017 | RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU56062 | lncRNA | upstream | 59055 | 33532772 ~ 33533155 (+) | True | G44983 |
| TU56025 | lncRNA | upstream | 151046 | 33439835 ~ 33441164 (+) | True | G44954 |
| TU55934 | lncRNA | upstream | 466761 | 33122020 ~ 33125449 (+) | True | G44871 |
| TU55932 | lncRNA | upstream | 488818 | 33103167 ~ 33103392 (+) | True | G44869 |
| TU55931 | lncRNA | upstream | 489337 | 33102639 ~ 33102873 (+) | True | G44868 |
| TU56191 | lncRNA | downstream | 1337747 | 34933206 ~ 34933787 (+) | True | G45100 |
| TU56200 | lncRNA | downstream | 1455398 | 35050857 ~ 35057957 (+) | True | G45108 |
| TU56231 | lncRNA | downstream | 1524620 | 35120079 ~ 35120344 (+) | True | G45124 |
| TU56236 | lncRNA | downstream | 1545963 | 35141422 ~ 35142529 (+) | True | G45129 |
| TU56242 | lncRNA | downstream | 1579776 | 35175235 ~ 35175446 (+) | True | G45135 |
| AMCG00013523 | mRNA | upstream | 7031 | 33582554 ~ 33585179 (+) | True | AMCG00013523 |
| AMCG00013519 | mRNA | upstream | 53888 | 33537219 ~ 33538322 (+) | True | AMCG00013519 |
| AMCG00013520 | mRNA | upstream | 70976 | 33517155 ~ 33521234 (+) | True | AMCG00013520 |
| AMCG00013514 | mRNA | upstream | 127530 | 33452017 ~ 33464680 (+) | True | AMCG00013514 |
| AMCG00013516 | mRNA | upstream | 143117 | 33442794 ~ 33449093 (+) | True | AMCG00013516 |
| AMCG00013522 | mRNA | downstream | 14708 | 33610167 ~ 33613789 (+) | True | AMCG00013522 |
| AMCG00013529 | mRNA | downstream | 22841 | 33618300 ~ 33619481 (+) | True | AMCG00013529 |
| AMCG00013521 | mRNA | downstream | 39280 | 33634739 ~ 33637208 (+) | True | AMCG00013521 |
| AMCG00013525 | mRNA | downstream | 52390 | 33647849 ~ 33661773 (+) | True | AMCG00013525 |
| AMCG00013526 | mRNA | downstream | 68618 | 33664077 ~ 33669293 (+) | True | AMCG00013526 |
| TU56031 | other | upstream | 145289 | 33442394 ~ 33446921 (+) | False | AMCG00013516 |
| TU55990 | other | upstream | 198062 | 33376520 ~ 33394148 (+) | False | AMCG00013515 |
| TU55933 | other | upstream | 485615 | 33106292 ~ 33106595 (+) | True | G44870 |
| TU55641 | other | upstream | 1162323 | 32423276 ~ 32429887 (+) | False | AMCG00013478 |
| TU56113 | other | downstream | 100133 | 33695592 ~ 33699545 (+) | True | G45029 |
| TU56162 | other | downstream | 519214 | 34114673 ~ 34114939 (+) | True | G45072 |
| TU56293 | other | downstream | 1739431 | 35334890 ~ 35338052 (+) | True | G45174 |
| TU56332 | other | downstream | 2059843 | 35655302 ~ 35659833 (+) | True | G45209 |
| TU56494 | other | downstream | 2742803 | 36338262 ~ 36370087 (+) | True | AMCG00013566 |
