RNA id: TU56130


Basic Information

Item Value
RNA id TU56130
length 3361
RNA type TUCP
GC content 0.49
exon number 4
gene id AMCG00013531
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 33692844 ~ 33699712 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTGTCTTCCGCCCGCGCCGCCGTCCCCGGCCCCCCTGCCCGCACTCGCCCGACCTTAAATACATCCCCGCCCGCACCGCAGCTCTCACACCCTGCGAGACACCGCCGCCGCCGCAGCCACCGCACCCTCGACGCACGGACTTCTCCcgcaacacacacagccagccatGGATCTGGATCTATCCGCAGCGGCAGGATGCGACAAGGACAAGATCGACAAAAAATGCGCCAGCAAGGACGAAGCCGGGCACAAGAAAAAGGAGGGGAAGGGAAAGGACTGCAAGGATCATTGCAAAGATCACAAGGAGCACGGCAAAGAGCATAAGGATCACTGCAAAGACCACAAGGGCCATGGCAAAGACCACAAGGATCACTGCAAGGAGCACAAGGGCCACGGCAAGGAGCACAAGGGCCATGGGggctcctcttcttcctccgaCAGTGAGGGCGAAGGAAAGCAAAAGaaggacaagaaaaacaagaccaAGAAACACTGATGACTCAAAACCACCCACCCCCTCCAGTACGGCTTTTTCTCCAGTGTGAAACGTAACCGTCTCTGCCATTTGGTTCTTTTAATGacaattaaaactaataaaCTGTGGCTCTTACCTAACCTGCTTCTGTCGTTCTTTCTGCCGTTGCCTACTCCGCAGATTCACAGGACCCCTTCAGTGCTGCTTCTATCAACTCCAGCAAAGCACCCACAGTCTGCGCAAATACCTATTAATTCCCTATTACCTACCTCTTAAAATGTCACTTCTTAAATGAAATCACAAGTTACTCCACTCGTCACCCCAGCCTCAAACTCACCTCATTATACCTCCTCCATTCCAGCACAATTCCCCGCTCTATCTTGGCgcaataaagaaaaggaagccatcattatatataaaagagGATAAATTTATtctttttctgaaacaaaacaaggatAAAACGCAGCAACACGGACATAGATGGCCTCGGGCTCCGTGTTAAATGCGAGGCGTGGCTGGTGTGTACACTGATATAAAAAAGACAGGCAAAGACATACAAGAcgaacaaaacaacacaaaaactatTTACAAGTCAACGTCAACTCGTGTCAGCACTCTGATCAGGAAATGCTCAGCGGCTGGTAGTTTTTAAAActattggtttaaaaataaatatagcccTCCCTCCCCCCATACAAAccctgaaatgaaaaaaaaaaaaaagacaaacgcATTGCACATTAGAACAAAACTTGACAAACATCCTAGTGCCCAAGATCTATCTAAGATAAgaacctgtctgtgtgtggcagAATAGTCTGGTGACAACAAAACTGATAATTCCCAACTGATGAGGGACCTTTAAGCAGGCCATacttacaacaaacaaaacaacctgcAGTTTCTGAAGTGCAATGGCGCTTGGTGAAATGGCGACTAACATGGCGATATAAAACGAAGGCTCGCCTTGGTGTTCCGCTCCTTCTACATCTCGCGTTGAAAGCAGCACGGCATGAAAAGTAGAGCATTTGTAAAACCAAAATTAACCAGCTGAACTAGTGTGCATATATTGGATTCCCCACTGTCACTAGTCTTTGAGGAGGAGATTCGAAACGGATCTGGTCCACTGCTGATCCACCAGTAGTACTACTATTTAAGGACCCAGCAGCATTACGATCGTCTGTTTTCCACTTGCTTGTAATGCCATTTCCAAGCAGTAACCTCACAGAATGCATACAACACAAACACTACATATGATTGGGATATCACTGCAACCGTTACAGTTATTGTTCCCCCAACTgggtttttaaagaaaagaaaagccatcCTACAACTGATTTAGACTCATCTGTGTTCGGACGACAGGAAATCGGTGCTGGGCTAACGGAGTTCAGTGGAAGGTAGACGTCGATTCGTGACATTTCCGTTTCTAGAACCTCCACTTCTCGGGTACGGTCGAGGGGGAAGAGAAAAGGGCGGGACTTGGAGGGGCATGCGAGGCAAGCACCAAAGCAGAGTGGCACAACCTTGACTCAACGCTgcgtaatttatttatttttaaacgtatccggggaaaaacaaaaacataataaacgtTAAAAAGACgctttaaaattataaacatggGCTTAACCGCAAGGGACTTTACAGGTTTCAGAACCACAATGTAGCTAAAATGGagggaaaaataacaataaatacccTAAATAAATACGCAAGAATCATAATTAATCTAAAACATGATTGGCAGAGTGAGGAAGTGAACCGAGATGCAGTACGTGCTGCACCCGTTACGGCTCGCCTTATCTCAAGTCCGAGCGGCAgcggggtgggtgggtgggcaCCACAGTAGGCCGATGTGCTCGTGGACGGTGGTCCCAAAGTCCACCTTGGGTGTGGCGTCTTGGTTTTGTTCCCGCACAGCTCTCAGTTTCTGAATTTTGCCCTGGACTCATAATGACTACTTTTTTCCTGCATGTGCTTTTCTTTGGGAGGGGTTTGGACATTTATTCCTTACACAGCTCAGGAGTTCATGTTATCTACAACACATACAAGGAATCTCACAGACAGTTACAATACAGGTCTGACTATGGCTTCTTTTAAACACACGATGGGGAAACTAAAGTAAGATGAGGCACCGATGGATATCCGGGACCGGGATCCATGGTCTCTGGGGGGTTTGGTCTGGGCAAAAGGCAAATCAGAGGGGCGAGGGGTGAGCGGACCCCTCAGTTACAGTCCAGTTTCCTCTCCGTGATCCTCAGCAGCATCTCGGAGTACCTCTCCAGCAGGGCCACGGTGCGCTCGTCCTTTAGCTGGCGGGAGGGCGAGGGCGTGGGTGAGGTTTCCGGCCTGGGCCCAGGGTGGCAGCTCTTGTTCGGGCTGCACACGCCGTCCAACTCCACCTGGACCGCGGAGAAGGCCTGCGAGAGGATCGTCCTCATCTGCAGCTGCTGCTCCGGGCTGTCTGACGCCGAGCGCAGctggagaggggaggagagatgGATTGAATAGCGCCAGAAAGAaagggtggggtggggaagACGTGAGAGGAGAGACTGGAATAAGCAGAGACATCAATAGACATAGCAGATGGACTGGAGTTCTGTCAGAGGTTAGAGCAGGGGGCAGAGGGTGAAAGGGGGGGGATTGACGAGAGGTCTCCGCGAGCTGGAGGGGTCGATCTGTGGACTCACCTTGCCATACAGGCACACCGCTTTCTTCATGCACTGCTGCAGCTCGTTCACGATCTGCTTGCAGGTCTGCAGGTTGGCCGCCTCACTCGCGACTCCTGGACACACAcggaggcagagagaggagagtcGTTATACTATTACTGGCATTGCTGTGGACAAATGGCGGTTGAAAGTTGAAACCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56128 lncRNA downstream 2475 33689446 ~ 33690369 (-) True G45043
TU56127 lncRNA downstream 3421 33689095 ~ 33689423 (-) True G45042
TU56126 lncRNA downstream 3913 33687822 ~ 33688931 (-) True G45041
TU56125 lncRNA downstream 6778 33685739 ~ 33686066 (-) True G45040
TU56124 lncRNA downstream 7946 33684389 ~ 33684898 (-) True G45039
TU56133 lncRNA upstream 14511 33714039 ~ 33715806 (-) True G45048
TU56140 lncRNA upstream 183918 33883446 ~ 33883745 (-) True G45055
TU56148 lncRNA upstream 270514 33970042 ~ 33970319 (-) True G45062
TU56166 lncRNA upstream 619362 34318890 ~ 34319514 (-) True G45076
TU56172 lncRNA upstream 781022 34480550 ~ 34480787 (-) True G45082
AMCG00013528 mRNA downstream 83224 33596330 ~ 33609620 (-) True AMCG00013528
AMCG00013527 mRNA downstream 116240 33557031 ~ 33576604 (-) True AMCG00013527
AMCG00013518 mRNA downstream 191097 33468860 ~ 33501747 (-) True AMCG00013518
AMCG00013517 mRNA downstream 251908 33429105 ~ 33440936 (-) True AMCG00013517
AMCG00013513 mRNA downstream 325969 33354581 ~ 33366875 (-) True AMCG00013513
AMCG00013534 mRNA upstream 832902 34532430 ~ 34544065 (-) True AMCG00013534
AMCG00013535 mRNA upstream 844549 34544077 ~ 34648703 (-) True AMCG00013535
AMCG00013538 mRNA upstream 1292354 34991882 ~ 34992115 (-) True AMCG00013538
AMCG00013536 mRNA upstream 1356089 35055617 ~ 35057435 (-) True AMCG00013536
AMCG00013537 mRNA upstream 1366721 35066249 ~ 35067931 (-) True AMCG00013537
TU56122 other downstream 13937 33678224 ~ 33678907 (-) True G45037
TU55769 other downstream 1068926 32622181 ~ 32623918 (-) False AMCG00013488
TU55745 other downstream 1124892 32565760 ~ 32567952 (-) True G44719
TU55173 other downstream 3206513 30483519 ~ 30486331 (-) True AMCG00013411
TU56648 other upstream 3259649 36959177 ~ 36959914 (-) True G45468
TU56784 other upstream 3431330 37130858 ~ 37133244 (-) True G45571
TU56785 other upstream 3431330 37130858 ~ 37223824 (-) False G45571
TU56844 other upstream 3783388 37482916 ~ 37483608 (-) True G45614
TU56849 other upstream 3789201 37488729 ~ 37538310 (-) True G45617

Expression Profile