RNA id: AMCG00013532


Basic Information

Item Value
RNA id AMCG00013532
length 1383
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00013532
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 34057613 ~ 34058995 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGGCTGCTGTTCTCCTTGCTGGTGCTCACCATGTCAGTGAAGGCACAGCTATGCCCTAAGCGCTGCATGTGCCAGAACCTGTCCCCCTCCCTGGCCATCCTCTGTGCCAAGACCGGTCTGCTCTTTGTACCCACTGTCATCGACCGAAGAACAGTGGAGCTGAGGCTGACTGAAAATTTCATCACGGTGGTAAGGAGGAAAGACTTTGCCAACATGACCAGCCTCTTGCACTTGACTCTGTCCAGGAACACCATAAGCCAGATTATGCCTTACACTTTTGCCGACCTCAACCGGCTCCGGGCCCTCCACTTGGACAGCAACCGCTTGACTGTAATCGGGGACGAGCACTTCCGGGGCCTGACCAATCTGAGGCACCTGATTCTGAGCAACAACCAGCTGCACGACATCTCGCCCAAGTCGTTTGATGACTTCCTGGGCACCCTGGAGGACCTTGACCTGTCTTACAACAACTTGGTGCACATTCCCTGGGACACCATCTCGAGGCTCACCAACGTCAACACCTTAAACATGGACCACAATTTGATAGAACACGTTCCTCTGGGGATCTTCGCCAACTTGCACAAGCTGGCCCGCTTGGACATGACCTCCAACAAACTGAAGAAGATCCCCCCTGATCCTCTCTTCCTGAGAATCCCTGTCTATGCCAAATCCAAAGGGTCGCCCCTGACATCGCTGATCCTCAGCTTTGGGGGGAATCCTCTCCACTGCAACTGTGAGCTGCTTTGGCTCCGGCGCCTCACCCGGGAAGATGACCTGGAGACCTGTGCTTCCCCCCCAGACCTGATGGCCAAGTATTTCTGGACCATCCCCGAGGAGGAGTTCATCTGCGACCCCCCGGTGATGACCAGAAAGTCACCCAAGACCTTTGTCATGGAAGGGCAGCCTGTTAGCTTGAAGTGCAAAGCCAATGGTGATCCAGACCCAGACATCCACTGGATCTCCCCCGAGGGAAGGCTGATTTCCAACACTTCCCGGATGACCCCCTACAGCAATGGCAGCCTGGAGATCAACATCACCTCAGTGAAGGACACGGGCACCTTCACTTGCATCGCTTCCAATGCCGCTGGGGAGTCCACGGGCCACGTGGAGCTGGTGGTCAACCCGTTGCCTCACCTAGCCAACAGCACCAGCCGGGTCCGAGAGCCAGAACCCGGGCCCTCTGACATCCTTACCTCCGCCAAGTCCACTTCCCCCTCCGGCAACGACACCAAGATGCAGGACAAGAATGTAGTGCTGGCGGAGCTCACCATGAACTCGGCTCTTGTCAAGTGGCCATCACAGCGCCACGTCCCAGGGATCAGGATGTACCAGGTCCAGTACAACAGTACTACTGACGACACCCTCGTCTACAGGTAA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56062 lncRNA upstream 524458 33532772 ~ 33533155 (+) True G44983
TU56025 lncRNA upstream 616449 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 932164 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 954221 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 954740 33102639 ~ 33102873 (+) True G44868
TU56191 lncRNA downstream 874211 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 991862 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1061084 35120079 ~ 35120344 (+) True G45124
TU56236 lncRNA downstream 1082427 35141422 ~ 35142529 (+) True G45129
TU56242 lncRNA downstream 1116240 35175235 ~ 35175446 (+) True G45135
AMCG00013530 mRNA upstream 363716 33670735 ~ 33693897 (+) True AMCG00013530
AMCG00013526 mRNA upstream 388320 33664077 ~ 33669293 (+) True AMCG00013526
AMCG00013525 mRNA upstream 395840 33647849 ~ 33661773 (+) True AMCG00013525
AMCG00013521 mRNA upstream 420405 33634739 ~ 33637208 (+) True AMCG00013521
AMCG00013529 mRNA upstream 438132 33618300 ~ 33619481 (+) True AMCG00013529
AMCG00013533 mRNA downstream 22188 34081183 ~ 34084117 (+) True AMCG00013533
AMCG00013540 mRNA downstream 1059414 35118409 ~ 35129062 (+) True AMCG00013540
AMCG00013539 mRNA downstream 1079354 35138349 ~ 35141343 (+) True AMCG00013539
AMCG00013543 mRNA downstream 1155639 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013546 mRNA downstream 1248369 35307364 ~ 35309555 (+) True AMCG00013546
TU56113 other upstream 358068 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 610692 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 663465 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 951018 33106292 ~ 33106595 (+) True G44870
TU55641 other upstream 1627726 32423276 ~ 32429887 (+) False AMCG00013478
TU56162 other downstream 55678 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1275895 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 1596307 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 2279267 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 2344359 36403354 ~ 36403901 (+) True G45338

Expression Profile