RNA id: AMCG00013533



Basic Information


Item Value
RNA id AMCG00013533
length 777
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00013533
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 34081183 ~ 34084117 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATTCCATCTACCAGTCAAGACTTCTTGGTGAAGGACCTGGTTTCTGGCCGGGAGTACGACCTGTGTGTCCTGGCGGTGTACGATGATGGGATCACCTCTCTGACGGCCACCCGTGTGGTGGGCTGTGTCCAGTTCACCACGGAACAAGAGTACAGCCAGTGCCAGTCCATGCACACGCAGTTCCTGGGCGGCACCATGATCATCATCATCGGGGGCATCATCGTGGCCTCAGTGCTGGTCTTCATCATCATCCTGATGATCCGCTACAAGGTCTACAACAACCAGGGGGAGCCCAGCAAAGCCAAGGTCAGCAATGTTTGTTCCCAGACCAACGGAGGCCAGGGCAGTCAAGTCACCAGGTCGGCTTCCAAAGGTGCTGAGAGCCAGGAGGAGCAGGTTGTGGCCAGCTCTACGGTGGGAGGGGGAGGCCCCGGGGTGATCAGCATCAGCAGTGCGGGGGTGAGCGTCAGCGGAGCTGTCAAAGACTCCAACACCGTGACCTTGGTGGTGGACTGCGAGAAAGTCACGCAGCTCTCAGAGATGACCGCGGAGGACATTGTGTCGCCCGTGCAGAGGCGAAAATCCAGGACTAGTGTCGAGCTCATGAGGCAATCCTCACTGTCCTCTAAAGAAGCACGGGGTGGAGAAGCACTGGGAGACTGTCTGTGTTGCCCTCTGCTCCTGCCCCATCTCCCCCAGCACTACCTGGCTGCAAAAGCACTGGATGGAGATTCAGCAGAAGGTGAGAAGTGGGAGGTGGGGCACAAAGGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56062 lncRNA upstream 548028 33532772 ~ 33533155 (+) True G44983
TU56025 lncRNA upstream 640019 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 955734 33122020 ~ 33125449 (+) True G44871
TU55932 lncRNA upstream 977791 33103167 ~ 33103392 (+) True G44869
TU55931 lncRNA upstream 978310 33102639 ~ 33102873 (+) True G44868
TU56191 lncRNA downstream 849089 34933206 ~ 34933787 (+) True G45100
TU56200 lncRNA downstream 966740 35050857 ~ 35057957 (+) True G45108
TU56231 lncRNA downstream 1035962 35120079 ~ 35120344 (+) True G45124
TU56236 lncRNA downstream 1057305 35141422 ~ 35142529 (+) True G45129
TU56242 lncRNA downstream 1091118 35175235 ~ 35175446 (+) True G45135
AMCG00013532 mRNA upstream 22188 34057613 ~ 34058995 (+) True AMCG00013532
AMCG00013530 mRNA upstream 387286 33670735 ~ 33693897 (+) True AMCG00013530
AMCG00013526 mRNA upstream 411890 33664077 ~ 33669293 (+) True AMCG00013526
AMCG00013525 mRNA upstream 419410 33647849 ~ 33661773 (+) True AMCG00013525
AMCG00013521 mRNA upstream 443975 33634739 ~ 33637208 (+) True AMCG00013521
AMCG00013540 mRNA downstream 1034292 35118409 ~ 35129062 (+) True AMCG00013540
AMCG00013539 mRNA downstream 1054232 35138349 ~ 35141343 (+) True AMCG00013539
AMCG00013543 mRNA downstream 1130517 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013546 mRNA downstream 1223247 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013545 mRNA downstream 1241874 35325991 ~ 35331505 (+) True AMCG00013545
TU56113 other upstream 381638 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 634262 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 687035 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 974588 33106292 ~ 33106595 (+) True G44870
TU55642 other upstream 1651296 32423276 ~ 32429887 (+) True AMCG00013478
TU56162 other downstream 30556 34114673 ~ 34114939 (+) True G45072
TU56293 other downstream 1250773 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 1571185 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 2254145 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 2319237 36403354 ~ 36403901 (+) True G45338

Expression Profile