RNA id: AMCG00013540


Basic Information

Item Value
RNA id AMCG00013540
length 1500
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00013540
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35118409 ~ 35129062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGTTGGGGGCTTAGGGAGCTCCATTGGTGGAGGGCATTATGGCCCAGCCCCCTTTTTTTTAGCAGCAGTTACATTAGAAAAGGAACTGGAGAACCCAGAAGCATCCTGTCACAAGGGCTTTGTCAGAAGACGTTCTACCAAAATCTGGTGGTCAACCCTGGTCCATGAGTCGGACTCCCTGGTGGTGTGTGAAGTAGATGAGAGCCTGAAGGACAAGCTGAAGAAATTCCGCTTCCGCAAAGAAACCAACAATGCAGCCATCCTCAtgaaaATCGACAAAGATAAGCAGTTGGTGATCCTGGAGGAAGAATTCGAAGACATTTCTCTGGACGACTTGAGGATCTACAGCTATAAGTATGTCCACGGAGATGGCAGAGTGTCCTATCCACTGTGTTTCATCTTCTGCAGCCCTGTGGGCTGTAAGCCGGAACAGCAGATGATGTACGCCGGCAGCAAGAACAGACTGGTCCAGGCTGCAGAACTCACCAAGGTTTTCGAGACCCGAAATGCAGAGGACTTGTCAGAGGAATGGCTGAAAGAAAAACTCGCCTTCTTCCGCTAAAGGTCTTCACTTGTTTTTAAAGGGCAagcttattttttatgttacagaaagaattgataaataagtacgATAAGTTGAACTTCATAGTATATATTGTTCTGTTAGTATAAGCATTGTTTTGATACGTGTAAGCAATCACAGAAAAGATTCAATAAACAACATGTGGGTTTGATCTGTAATTAATCCTGTATTTGGATATAATACACCTTCACCTTGATGATAGAATAAGACATGTAAACATAGCTGATCTTTAAAAGAGCAAGAAGAAAAACttgaataacacattaataaaaaaatgattacatGTACAAATCTTGTCAATGCAATTCAAATGTCACTTATATGACGTGTGACTTTGCCAACAAGAGTTAATTACAACTCTGAGCAAGAccaatctgaaagaaaaaacaacccaTAAATAGATCATCATCAAcctttatcaatccactgctggatgacaGCCTTTGCCAGATGTTTCCAGTTATTTTGATGTAcagcatttgtttcttttcaccTTCCCATCTTTTCTGTGGTCTTCAAGCTCGTTTCATATCATGGGGtccattctatagcttattttgtcTAGCTtttatctgttcttcttgcaatctGTCCAACCAATTGCCATCATTATAACATCATGTTTAAAACCATTTCCCATGAAACAAAAACGGCTATTCGCAAATTGTCCAATGCAATCCAGATCACTTGCTGCaactgcaattatttttttaagaagcttTGAGACATTTTTAATCCTACAGTGCTGAGTGTGGGGGAAAGAAAACCATCTTGGTTTTCGACACTGCGAAGAATTATGCTTAGACTGCAACTTCTTTCTTCCAGCagccaacacaaacacattcctAAACAGGCATGTCTAAAGGTTAGGAACACTATGAAGACCGTTTTTGTTCTCCTTTGTTGATTTCA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56200 lncRNA upstream 60452 35050857 ~ 35057957 (+) True G45108
TU56191 lncRNA upstream 184622 34933206 ~ 34933787 (+) True G45100
TU56062 lncRNA upstream 1585254 33532772 ~ 33533155 (+) True G44983
TU56025 lncRNA upstream 1677245 33439835 ~ 33441164 (+) True G44954
TU55934 lncRNA upstream 1992960 33122020 ~ 33125449 (+) True G44871
TU56236 lncRNA downstream 12360 35141422 ~ 35142529 (+) True G45129
TU56242 lncRNA downstream 46173 35175235 ~ 35175446 (+) True G45135
TU56259 lncRNA downstream 97766 35226828 ~ 35227029 (+) True G45150
TU56272 lncRNA downstream 150843 35279905 ~ 35280457 (+) True G45162
TU56283 lncRNA downstream 170810 35299872 ~ 35302781 (+) True G45170
AMCG00013533 mRNA upstream 1034292 34081183 ~ 34084117 (+) True AMCG00013533
AMCG00013532 mRNA upstream 1059414 34057613 ~ 34058995 (+) True AMCG00013532
AMCG00013530 mRNA upstream 1424512 33670735 ~ 33693897 (+) True AMCG00013530
AMCG00013526 mRNA upstream 1449116 33664077 ~ 33669293 (+) True AMCG00013526
AMCG00013525 mRNA upstream 1456636 33647849 ~ 33661773 (+) True AMCG00013525
AMCG00013539 mRNA downstream 9287 35138349 ~ 35141343 (+) True AMCG00013539
AMCG00013543 mRNA downstream 85572 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013546 mRNA downstream 178302 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013545 mRNA downstream 196929 35325991 ~ 35331505 (+) True AMCG00013545
AMCG00013549 mRNA downstream 677739 35806801 ~ 35814022 (+) True AMCG00013549
TU56162 other upstream 1003470 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 1418864 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 1671488 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 1724261 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 2011814 33106292 ~ 33106595 (+) True G44870
TU56293 other downstream 205828 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 526240 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 1209200 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 1274292 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 1501915 36630977 ~ 36638148 (+) False AMCG00013571

Expression Profile