RNA id: AMCG00013545



Basic Information


Item Value
RNA id AMCG00013545
length 849
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00013545
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35325991 ~ 35331505 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATCAAACTCAGAATACGATGCACAAAGAGGAGGACTCCGGCCTGACAAAGCCTGGGATTAATTTGTTGGAATTGCCTGAAGAAATCCTGCAGCTGATCCTGAGCTATGTGCCAGCCAGGAACCTACTGCAGGATTGCCAGCGAGTCTGTAAGGCATTGCACGCTGTCATCGGGACACACTCCTTCTGGATATTCAAGTGTGAGGAGGAACGGCTCATCCCTCGCTTCAGTGGAAAATACCTGCCTCTAAACTTCAACTGGAAACGGTTTTGCATGAAAGAGCCCTTTAACCGAAACCTCATTCGAAACCCTTGTGGAGCAGaggGTCTGCGTCACTGGCATGTAATTAAAGGGGGAGATGGGTGGTCAGTGAAGACCATCTCTGAGGAAGACTTGACAGgaataaaatcaacatttgtTTCTTCGTTCTACTGGTCGGAAAAATCTCAGACAATAGATTTGATCAAAGAGGGATTTTGGGACAGTATCCTGGATAAATACCAGCCGGAGATCGTTATAAATGACTGGTTTTCAGCATATAAACAATGGGGAGGAACGTACTGGATGCTCATACAGCTgctaggaaaaaataaacacagggtCATTAAGGAATACAAGACGGACATCCGAGTTATGGAGACCGGCCAACCTTTACAGCAGTGGGACCAGGTCACACATGTGTTCAGAGACTATGGCCCTGGGGTGCGCTATATAAAGTTAATCCACAATGGGAAGGATGTTCTGTTTTGGAAAGGACACTTCGGAGCTTGGGTGTCAAACAGCTCAGTCACAGTGAGGTTAAGAATACCTGAAGAACTCGCAATGGAAGATGAAAAAGTTATTAGA

Function


GO: NA

KEGG:

id description
K10102 FBXO27; F-box protein 27

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU56283 lncRNA upstream 23210 35299872 ~ 35302781 (+) True G45170
TU56272 lncRNA upstream 45534 35279905 ~ 35280457 (+) True G45162
TU56259 lncRNA upstream 98962 35226828 ~ 35227029 (+) True G45150
TU56242 lncRNA upstream 150545 35175235 ~ 35175446 (+) True G45135
TU56236 lncRNA upstream 183462 35141422 ~ 35142529 (+) True G45129
TU56329 lncRNA downstream 219474 35550979 ~ 35551223 (+) True G45207
TU56352 lncRNA downstream 626602 35958107 ~ 35959584 (+) True G45226
TU56353 lncRNA downstream 636611 35968116 ~ 35968417 (+) True G45227
TU56354 lncRNA downstream 637164 35968669 ~ 35970696 (+) True G45228
TU56355 lncRNA downstream 641973 35973478 ~ 35973877 (+) True G45229
AMCG00013546 mRNA upstream 16436 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013543 mRNA upstream 108353 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013539 mRNA upstream 184648 35138349 ~ 35141343 (+) True AMCG00013539
AMCG00013540 mRNA upstream 196929 35118409 ~ 35129062 (+) True AMCG00013540
AMCG00013533 mRNA upstream 1241874 34081183 ~ 34084117 (+) True AMCG00013533
AMCG00013549 mRNA downstream 475296 35806801 ~ 35814022 (+) True AMCG00013549
AMCG00013552 mRNA downstream 534280 35865785 ~ 35869903 (+) True AMCG00013552
AMCG00013556 mRNA downstream 567586 35899091 ~ 35908745 (+) True AMCG00013556
AMCG00013560 mRNA downstream 729250 36060755 ~ 36085843 (+) True AMCG00013560
AMCG00013558 mRNA downstream 765650 36097155 ~ 36111063 (+) True AMCG00013558
TU56162 other upstream 1211052 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 1626446 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 1879070 33442394 ~ 33446921 (+) False AMCG00013516
TU55990 other upstream 1931843 33376520 ~ 33394148 (+) False AMCG00013515
TU55933 other upstream 2219396 33106292 ~ 33106595 (+) True G44870
TU56293 other downstream 3385 35334890 ~ 35338052 (+) True G45174
TU56332 other downstream 323797 35655302 ~ 35659833 (+) True G45209
TU56494 other downstream 1006757 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 1071849 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 1299472 36630977 ~ 36638148 (+) False AMCG00013571

Expression Profile