RNA id: AMCG00013552


Basic Information

Item Value
RNA id AMCG00013552
length 3144
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00013552
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35865785 ~ 35869903 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCATGGTCGTAGGTGGAGTCCGAGAAATCGAGTTATTTATTAAGATGCCAGAAGAATTGCTGTAAAGTTTGGGAGAGCTTGGTTGGAGCAGTAATAGCAGCTGAAATTCAGACTGATTGTTATTGGGAATAAAGCTCCCGACCCATCAACACCATGCCTTCCGACTTTCTTACACCTTTCCTGGAGCTGGACGACGAGTTCTGCAAGAATTTCCTCAGCCTGGACATGACGGATGGCATTGCGCCCACCACCAAGAAGAGGACGGTGGGCTTCCAGCGCAGGCATTCCCTGTGCCCCGTCACGCTGCCCAACTCCAAGTTCAACAGCGGCAGCGTGGACCAGATCAGCGAGCCGGCGTGCTGGCCGCTGCAGCAGGGGAACCAAAACTGGAACCGAGAGCAGCTGCCCAGGTCGTGTCTCAACCAGATCCCCTTTCGGGTGGACCGCTCCGTGAGCATGATTGAGAGTCAGGTGAGCCACTTTGGCAGCGGTGGCCAGGTGCCCGTGCCGCCGCCCCCGCCACCTACCTTGCCACCCCCCGGCCTGGGCAGCAGCGCCACGTCCCTGTCCCCGTCCAAGTCGCCCGCTTCCACTCCCCCCATCTCGTCCCGCTACAAGACCGAGCTGTGTCGCACCTACGAGGAGAGCGGCAACTGCAAATACGGAGCCAAGTGTCAGTTCGCCCACGGCATGGACGAGCTGCGAGGGCTCAGCAGGCACCCCAAGTACAAAACGGAGCCGTGCCGCACTTTCCACACCATCGGCTTTTGCCCCTACGGCGCCCGCTGTCATTTCATCCACAACGCGGACGAGCAGCGCTCAGGGCCGGCTGGCAGCTCTCcgccgcagcagcagcagatgcGCGACCGCCCCCAGCTGCTCCGTCATAGCATCAGCTTCGCCGGCTTCTCATCCCAAGCGCTCTCCGGCTTCCAGAGTGTCCAGGAGCCGCTGACTTTCTCCAGGGCTTCATCCGTCTCCCCCCCGCCTTCCACCGGCAGCCCGGACCTGCTGTCCCCCATCTTCCCCGAGCCCGGAGCTCTGAAGCACAGCTATCCGTTCTGCGGGGACCTGGGCAGCGAGCAGCCCCTCACCCCTCGCTTCTATGCGGCGACGGACTCCAGCTGCACGAAGTGTGCTCAGCCGCCGGCGGCCCAAAACCGACACCGAACTGTCTTCAGCTTCCCCGGGCTGCCCCTGCTGCAGAGAAGCGCCTCCGCCGACTCCCTTTCCGACCAGGAGGGCTACACCAGCTCCAGCAGCCTCAGTGGCTCCGAATCGCCTAGCTTCGAGGGCAGACGCCTCCCCATTTTCAGCCGCCTGTCTGTGTCAGACGATTaaatgaacttttttttttttgcacattgtattattttgaagcaGTTTTACCACTGCTttgtttcatattgtatttagtttttaaccCGACACTGTATACTGTTGTATACCCTTTTAGCTCCTATATgggtactttttaaaaatagctttatactgtttttcttattgtcttccagcaagaaaacaagaaagttCTATTTCTGAATTTTCTGTACCCATTTTGTTTGAGTGTACTAATTGTGGAAATAATAATCTAGGGCTTGAATAGGGACTAACCTTGATCATTTTAAACACGTGTTGCTATCACTTGAGTGTAGTGGCGTTGTATCTATGTAAAGTGCCATAAACACAgcttaaaaaaagtttgaaatcaGTGGTTACCCCAAAGCAGGAGTCCTTGTAGTTTGTTACCAAAGCTGAGATAAGTAGAATATCTGGGGTTTTGTAGACACAATTAAGATTAAGTCTTATGTTTATtccaaaatgtatgtaaaatgtagcCTTTGGTAAAGGCATCTTTAAAGACAGTATTATTGACTAGCCtaactttagtgttttgtacattatggatatttattttttttgttcttaaacaGGGCTGTTCTTGTTTTCGAACACTGTGTGAAagtgtcattttgtattttttgaatgCAATGTTGAAGAAAGGCTTTACAGAATTAATCTTTGTTTAGGCTATTTTGTAGCTttaagaaagaagagaaaaatagacTTCCTTGAATGTAGGAAATTATCTCAGGATTTTGACGAAGTGTTAAgcttcattttaaatggaaaaatacaaaccgtaaagtaacttttttttttaattatacatcagCTTAATCTATATATGTGCGGAATATGTTCCCTCCCCTATCCGAAGGCCACAAATTGGttatttgcaaatatgacaaagTAATATGATGGCAAATTCACCTAAAATGTGCTATTTCAATTTGATAATCCAAACtgaagtgtttatatatatatatatatatatatatatataatcaatttaTGCAGCCCAGAAACACTAAACTGTGATAAAGACTGTTAACTTGCCTTTTCTATTAATACTGATCATGTCAAACATTTCTCTTAGCATTAATGAACTTCGAGGGAACATTCTTGTCTATCCCTTCGGCAtacaaagctttaaaatgtacaaaaaactgagaaataagcacaaataatattgtatttggtACCACATTGCCtaagaaaaaagtattatatttaGAAATTTCACATTCACAAAGTCAAGAATCAAGATTGTTTTCCTGGGTGAAAACTGTCATATTTAAGAAGCTTTCAGCAGAACTTGTTGAAGACAAAAGATGACAATGTGACCATTACATAAATTATGTATAGAGAATAAATTGtggatatattttcatttaagtgCCTGAAGCATAAAACTTTAATGAAGGGCTAAACATCTTAAGGTTTTGTAAAATCCAGTTTTGTGTGTACatacatctttatatattttctttgttttcaacCTAGTGAGCTGAGTGCTTATTTCCTAGTGCCAACTTAGCCAAGAAACTGTGTTATTTGTAACTCTGCCTTAATTTTTtttgactgaaaacaaaaaaaaacaagcttttgcatttgttaacttaaaacttatttattttgtgttgtttttaaagcaaaaggtatatattttttgtttatacttttttcttttataatttaATGGTATTGTTTACATTCCATggcatggaaaccttttttgttttcttaatatattttttacattctcgttttaaaataaaccttttattacaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56329 lncRNA upstream 314562 35550979 ~ 35551223 (+) True G45207
TU56283 lncRNA upstream 563004 35299872 ~ 35302781 (+) True G45170
TU56272 lncRNA upstream 585328 35279905 ~ 35280457 (+) True G45162
TU56259 lncRNA upstream 638756 35226828 ~ 35227029 (+) True G45150
TU56242 lncRNA upstream 690339 35175235 ~ 35175446 (+) True G45135
TU56352 lncRNA downstream 88204 35958107 ~ 35959584 (+) True G45226
TU56353 lncRNA downstream 98213 35968116 ~ 35968417 (+) True G45227
TU56354 lncRNA downstream 98766 35968669 ~ 35970696 (+) True G45228
TU56355 lncRNA downstream 103575 35973478 ~ 35973877 (+) True G45229
TU56356 lncRNA downstream 104335 35974238 ~ 35984433 (+) True G45230
AMCG00013549 mRNA upstream 51763 35806801 ~ 35814022 (+) True AMCG00013549
AMCG00013545 mRNA upstream 534280 35325991 ~ 35331505 (+) True AMCG00013545
AMCG00013546 mRNA upstream 556230 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013543 mRNA upstream 648147 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013539 mRNA upstream 724442 35138349 ~ 35141343 (+) True AMCG00013539
AMCG00013556 mRNA downstream 29188 35899091 ~ 35908745 (+) True AMCG00013556
AMCG00013560 mRNA downstream 190852 36060755 ~ 36085843 (+) True AMCG00013560
AMCG00013558 mRNA downstream 227252 36097155 ~ 36111063 (+) True AMCG00013558
AMCG00013559 mRNA downstream 249663 36119566 ~ 36132259 (+) True AMCG00013559
AMCG00013566 mRNA downstream 493042 36362945 ~ 36363151 (+) False AMCG00013566
TU56332 other upstream 205952 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 527733 35334890 ~ 35338052 (+) True G45174
TU56162 other upstream 1750846 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 2166240 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 2418864 33442394 ~ 33446921 (+) False AMCG00013516
TU56494 other downstream 468359 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 533451 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 761074 36630977 ~ 36638148 (+) False AMCG00013571
TU56576 other downstream 866774 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 1005004 36874907 ~ 36877603 (+) True G45439

Expression Profile