RNA id: AMCG00013556


Basic Information

Item Value
RNA id AMCG00013556
length 2217
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00013556
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 35899091 ~ 35908745 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTTAACAAAGGATCAACTGCTTTCCACAAAAGAAAATACCTATATTTGTCTATAGGTTTTGTCATCATCAACCTGATCATATTTCtgacttacaaaaacaaaaatatggagTTTCTCTATGGAAACAGGGGGAATGACAATTCTGTTCCAATGAAACACAATCAATTAAATCCTCCAGAGGTGTGTGGTGCCCCTGCAAAGATCAACCCCTTGGTTCCCGTCAGAGGTACGAAAACAATTGTAGTGGCTCCTTATTTAGACAAGCGGGATTCAGGGCATGTTCGTGTTATTTCTATAGTTTACCGGTCAGAAATGGCTGATCACCACTGTTTGTTCTGTTGCGGTGGCCACAAGTTCAGGAGCAGAGCACAGTATTACATCCACAGTGACCACTTTGGCTTCGTCTTTGGCACAGCAGACCTGTTTTGCAATATCCCTCAAGGTTGCAGCCTCCCAACACACCTGGCAATTTACACTCCCCTTGGAGGGGACCAAGATGTGTCTTTCCTCCCAATACACAACAGCCAGCCCCAGCAACAGACCAACGCCTTCCCTTACGACTTCACAGTGTGCATTTCGACCATGTTTGGAAATTTCAACAACATCTTGCAGCTTGTGCAGACTATTGAGATGTACAAACTGCTAGGGGTCCAGAAAGTGGCCATCTACAAAAACAGCTGTAGCCCAGACACACAAAGGGTGCTGGATTTCTACCACAGCACAGGCCTCGTGGACATCATACCTTGGCCGATTACATCCTACATCAACGTTTCTGGTGGATGGCGCCCTTCTGAATTCCCTGGAGATCTGCACTACTACGGCCAGCTGGCAGCCCTCAATGACTGTGTGTACAGGTACATGTACAAGACAAAATACGTAGCCCTGAACGACATTGATGAGATCATTCTACCCCTAAAGCACAGGACCTGGAATGAGATGATGGAAGACCTTGAACAGCAGTATGGTCTACACACGGGTTTTGAGTTTGAGAGCCATGTTTTCCCtcaaaacataaatgaaaagaGTGGTAGGTTCCATCTGCAGGAATGGAAAGACATCCCAGGGGTTAACGTGCTGGAGCACATTTACCGAGAGCCAAATAAAGCAGGGGTTTTTAATGCTTTCAAAGTCATTGTGAACCCAAGGTTGGTGCAGGAAGTCACAGTCCATGGGTTTTTGAACTTCGACTATCAGACTATAAGAATCCAACAAAATTTTGCTTGGATGTACCACATCAGGCGGCCTCAGAGGCATGATCTGCACCAATCAGACCTAATCCGAGATGACCATTTGTGGAGTTACTCAGAAAAAAAGTACCTATTTTGTTCCATATGTTTTATCATCATCACCCTGTTAATATTTCTGGCTTACAATAAAACTTATATGGAGTTTAAGAAGCCGAACACAGGAGACTTACAgggaaacaacaacacacaaggGAATAATGAAATTCctccaatgaaaataaatcaagccACAGAGTCTCCCAATCCTCCAGAGGTGTGTGGTGCCTCTGCAAAGATCGACCCCTTGGTTCCCGTCAGAGGCACGAAAACAATTGTAGTTGCTGCTTATTTagacaagcaggattcagagcATGTCCGTGTTATTTCTATAGTTTACCGGTCAGAGATGGCTGATCACCACTGTCTGTTCTGTTGCGGTGGCCGCAAGTTCACAAGTAGAGCGCAGTGTCACATCCACAGTGACCACTTCGGCTTCGTCTATGGCACAGCAGACCTGTTTTGCAATATCCCTCAAGGTTGCAGCCTCTCAACACACCTGGCAGTTTACACTCCCTTGGGAGGGGACCAAGATGTGTCTTTCCTTCCAATACACAACAGCCAGCCCCAGACCAACGCCTTCCCTTACGACTTCACAGAATGGAAAGACATCCCTGGCGTTAATGTGCTGGAGCACATTTTCCGAGAGCCAAATGAAGCAGGGGTTTTTAATGCTTTCAAAGTCATTGTGAACCCCAGGTTGGTGCATGATGTCACAGTCCACGGGTTTTTGAACTTTGAATATCATTCTATAAGAGTCCAACAGAATTTTGCACGGATGTACCACATCAGGCGGCCTCAGAGGCATGATCTGCACCAATCAGACCTAATCCGAGATGACCATTTGTGGAGTTACTCAGAAAAGTTGGTACCAGCTGTTAATGAAGTGTTAAAGAAAAGCAACTTAGAGAGGGTTAAAGCAACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56329 lncRNA upstream 347868 35550979 ~ 35551223 (+) True G45207
TU56283 lncRNA upstream 596310 35299872 ~ 35302781 (+) True G45170
TU56272 lncRNA upstream 618634 35279905 ~ 35280457 (+) True G45162
TU56259 lncRNA upstream 672062 35226828 ~ 35227029 (+) True G45150
TU56242 lncRNA upstream 723645 35175235 ~ 35175446 (+) True G45135
TU56352 lncRNA downstream 49362 35958107 ~ 35959584 (+) True G45226
TU56353 lncRNA downstream 59371 35968116 ~ 35968417 (+) True G45227
TU56354 lncRNA downstream 59924 35968669 ~ 35970696 (+) True G45228
TU56355 lncRNA downstream 64733 35973478 ~ 35973877 (+) True G45229
TU56356 lncRNA downstream 65493 35974238 ~ 35984433 (+) True G45230
AMCG00013552 mRNA upstream 29188 35865785 ~ 35869903 (+) True AMCG00013552
AMCG00013549 mRNA upstream 85069 35806801 ~ 35814022 (+) True AMCG00013549
AMCG00013545 mRNA upstream 567586 35325991 ~ 35331505 (+) True AMCG00013545
AMCG00013546 mRNA upstream 589536 35307364 ~ 35309555 (+) True AMCG00013546
AMCG00013543 mRNA upstream 681453 35214634 ~ 35217638 (+) True AMCG00013543
AMCG00013560 mRNA downstream 152010 36060755 ~ 36085843 (+) True AMCG00013560
AMCG00013558 mRNA downstream 188410 36097155 ~ 36111063 (+) True AMCG00013558
AMCG00013559 mRNA downstream 210821 36119566 ~ 36132259 (+) True AMCG00013559
AMCG00013566 mRNA downstream 454200 36362945 ~ 36363151 (+) False AMCG00013566
AMCG00013564 mRNA downstream 472224 36380969 ~ 36403018 (+) True AMCG00013564
TU56332 other upstream 239258 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 561039 35334890 ~ 35338052 (+) True G45174
TU56162 other upstream 1784152 34114673 ~ 34114939 (+) True G45072
TU56113 other upstream 2199546 33695592 ~ 33699545 (+) True G45029
TU56031 other upstream 2452170 33442394 ~ 33446921 (+) False AMCG00013516
TU56494 other downstream 429517 36338262 ~ 36370087 (+) True AMCG00013566
TU56506 other downstream 494609 36403354 ~ 36403901 (+) True G45338
TU56545 other downstream 722232 36630977 ~ 36638148 (+) False AMCG00013571
TU56576 other downstream 827932 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 966162 36874907 ~ 36877603 (+) True G45439

Expression Profile