RNA id: AMCG00013567


Basic Information

Item Value
RNA id AMCG00013567
length 9398
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00013567
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36462852 ~ 36476392 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGATGGAGATTCGGAGGAAAGTCATGCTTTCATCAAGGGAAGAGAATCAGTAACTGGTGAGGTTAAGGACAAAGATCGCACTGCCCACTCAGAAAGGCCACACCCCTCTCACCACCCCCCAACAGCAGAGGAGCCGGAGAGCCCAGAAAGAGTGGAGGAAGTGGCCCGCTCGGAGCTGGTAGAGGTAGTTGTAGAGACGGAGGCGGAGGCTGGTGCCAGTGGATTCAGCGTGGCAGGAGGAGGGCAGGAAGGCATTTTTGTCAGAGATGTACTCAAGGATTCACCAGCAGCAAAATCTCTCAGCATGAGGAAAGGAGATCAGCTGCTCAGTGCAAGGGTGTACTTTGAAAATGTGAAGTATGAAGATGCTCTGAAGATATTGCAGTTTGCTGAACCCTACAAGGTGTCCTACTTTCTGAAGAGGACAGTGCCTGGAGCTGATATAAGTGTTTCCTCGGGCTCCGCTAGCCTGGATGTCAAGGGACCAAAAGCTAAGATGCCCCGAATGAGTGTCAAAAGCATCAAACCCATCaaagggaagaagaagaaaagtcGCTTCAGCCTGAAAAAGAGCAAGGAAGGCAAGGCCCCAGCCGCAGAGTTCAAGATGGAGGGACCCCCAGCTAAACTTGATTTCAGTCCAGTGGATGTGGAGTTTGCCTTTCCCAAGTTTTCTAAACTCAGGAAGGGCAAAAAGGCATCTGCAGAAGGTGGGGTGAAATTCACCGGCTCGGGTGCACCAGGTGGCATAGCAGTTGCCggcagaaagaaaaagagaatcAAGTTCCCCAGAATGAAAACTAAAGGAAAAGCTGCAGCTAAAGGTGATGTAAGTGTGGAAACCCCAAAAGCAGAAGCAAAAGTCACTCTTCCTGAGGGTAAGGCAGACCTGGATGTGCCTAAGGCCAAAGCCAAGGTCAAAGGGAAGTCCTCAAAGTTTGGGATCTCCTTCCCCAAAACCAAAAAGCCCAAAGTTGATGTAAGCCTCCCTGAGGGAGGTGTGATGTCCCCGGAGGTCAAATTCAAACCCCCATCAGTTGAACTGGACATCAGTCTGCCGTCagcaaaaaaggaaattgaCTTACCAGAAGtggaatttaaagaaaaagaaggatATAAATTTAAACCCCCCAAAGTGGGGCTTGATTTTGGTCTGCCATCAGGAAAAGGCACCTTGCCCAAGCCTGAAGTCGAAATAAAAGGCAAGGAAGAAGTTAAGTTTAAACCACCCAAAGCTGAGTTGGAAATTGGATTGCCTTCGGACAAAGTGAAAGGTCCCAAGGTGGATATCATGGGATACACTGAAGGTTCAGAAGGCACATCGAAAGGAGAAGGGTTTCACATTAAGATGCCTAAAATTGACGTCTCCACAAAAGCAGGGGGTGAAATTGAAGGCCCTGAGGGTAAGATGAAAATGCCTAAACTACCCCAGATAGAACTTTCCCTTCCCTCAGCAGAGCTTGAAGAAGCTGGAGCTGCAAGTGTTGAGATTCCAGaaggaaaacacaaagctgGATTAAAAATGCCATCGATAGACATTACTGCCCCCAAAGTAGACATTGATTTAAGCCTACCAAAAGGGAAAGCAGAGATTGAGGGAGAGGTGAAGTTGCCAGCAGCAGCTGATGAGGGCCTGAAGATAAAAATGCCAAGAGTAGAACTCCCAAAATTTGGAGGGTCAAAGGGTGACATGGAGTTTCAATTATCCCCTCCAAAAGTAGAAGGAGACATCAAAGGTCCCAAGATTGAGGCTGGAGAAATAGAAGTTGAAGGCAAAGGTCCTAAAATGAAGGTGCCATCCTTTGGAATTTCATTACCAAAAATGAAAGGAGAACATGCTCTGCCTGAAGCAGAAGTAACTCTTCCTGATGAAGGCAGCAAAGGAAAGATGAAAATGCCTGTCATTGATATTTCATTGCCTACTCCTGAAATTCACCTCCATCTTCCAAAGGGGAAAAGAGCAGGTGAATTGGAAATGAAAGGTGATTTGGAAGCAGGGAGTCAAGGAAGCAGAGAAAGACTGGATTTGAAGTTAAAAATGCCAAAGATACCTCTGCCAAAGTTTGGTGTGACAGGAAAGGTAAAAGATTCAGATACGGATGTACACGTTTCTGGTCCTAAAGTTGATGTGAAAGCCCCTGGAGCAGATGTTAAGATTCAGCAAATTGATATAGAGGGCCCTGAGGCTAAAGGTGCAAAAATAACTATGCCAAAGGTTGACATTTCATTACCAAAAATAAAGGCACCTGACACAGCTTTAGATGTCCATGGAATGGAGATTGAGGGACCTTCTTTTAAGGGGCCAAAAATATCAATGCCAAAAGTAGATATCTCCTTACCAAAAATAAAGGCACCTGAGGGGGATTTTGAAGGCCGTGGAATTGAAATAGAAGGCCCCAAGATAAGTATGCCTAAAGTTGATATTTCTCTCCCAAAAATGAAATCGATGGATTCTCATTTTGAAGTGGAGGGATCAGGAgccaagggggaaaaaataagtatgCCCAAAGTTGATATTTCTCTTCCAAAAATGAAGACTCCAGAAATGGACTTTGAAGTAGAAGGGCAGGGAGAGAAAGGGTCAAAGATAAGCATGCCCAAAGTCGATATTTCTCTACCGAAAATGAAATCACCCAAAATGGATTTTGAAGGGCAAAGATAAGTATGCCCAAAGTTGATATTTCTCTTCCAAAAATGAAGTTACCAGAAGTGGATTTTGAAGTTGAAGGACCTGGGGCTAAAGGGGCAAAATTAAGCATGCCCAAGATTGACTTTTCTCTTCCAAAAATGAAATCACCAGAAGTGGATTTTAATGTTGAAGGGCTTGGGGGTAAGGGAGCAAAGATAGGCTTGCCCAAGGTTGATATTTCTCTTCCCAAAATGCAGTCAACTGATGCAGATATAGAAATTGAAGGGCCTGGAACTAAAGGGGCAAAGATGGGGATGCCAAAAATTGACATTTCTCTTCCAAAAATGAAGTTACCAGAAGCAGAGTTAGACCTGAAAGGAAAGGAACTGGAAGGACCTGATACAAAGGGCCTGAAAATGAGTATGCCTAAAATTGACATTTCCCTcccaaaaatgaaatcaaaagaggGTGAATATGATGTCCAAGGAATGGACATTAAAGGTCCTTCTGCAAAAGGGCCAAAAATGTCAATGCCGAAAGTGGACATTTCATTGCCAAAGGTGAAATTCCCAGAGGCAGACATGGGTGTGCAAGGACCTGCCATTGAAGGACCTGATGCCAAAGGGCCAAAGATATCAGTGCCAAAAGTGGACATTGCATTACCTAAAGGAAAACTACCTGAGGGAGAGGTGTCTATTCCAGAGGGGAAATTGAAGGTCAATGTCAAAGGGCCAACAGTGGGAATGGATGAAGCAGATGGAAGGCTCAGCATGCCTTCAGTCAAAATGGTGACAGTTAATATTGATATGCCAATGATTGACCTTGATTTGAGTCTCCCAAAGGTTAAAGGGAAAGATACAAGCTTGGAGCGAGGTGTTAGCCCTCCAGATGCCTCCAGAAGCTTTGAAATGCCTGATGTCCAGTTAAAGATGCCCAAAATCCCAGTGCCAAAATTTGGCGTGAAAGGTAAAGATGAGGAGATAGAGACTGACCTTGGTCTCCAAGGTGACATGAAGCTACCAAAAGGAAAGTTTGATGTCAGCCACCCAGAAATGGAAGCTGGCATCAAACCACCTAAAATCAAACTGGATATGAAAGGGCCTGAATTTGATGCCGAGGGAACAGATGCTAAACTGAAACTACCTTCAGTCAAAATGCCAAAACTTGATATCTCCACTCCCAAACTACCAGATGtggatttaaacattaaaatgccaaAGGGAGCAGCTGTTGCAACAACAGGTGGGGATCTAAGTGGCCATGGACCTGAGTTGAGTGCCAAAGGCCCAGATGTCCATATTAAAATGCCTAAACTTCCAACATTTGGCAAAGGAAAAGGGGAGACTGACATCAAAGCTCCTGAACTTGACATAGAAGCCCCAGACTATCATTTTAAAGgccctgaaattaaaatgccCAAATTTGGAATGTCTTTTCCCAAAGGCAAACAGGGAGGATTTGACATAGAAGGTGAAGCAGGCATGAAGAGTGATGTTGATTCTCCCAAGATGAAGGTTAAGGGACCCAAAGAAAAGTTGAAAATTGAGGGGCCTGACATTGATACCACAGATGCAAGCATGAAACTGCCAACTTTAAAACGGCCTACTGTGGATATCTCTGTACCAAAGGTTGATTTGGACTTTGCCTTGCCCAGAGTCAAAGGGTATGACAAGGAGCAGATTGAATTGCTGAAAGCTGAAGCTGAAAGGCCATCATCAGGAGCAAGTTTTGAAGTGCCTGACATTTCCTTGAAAATGCCAAAGTTTTCATTTCCCAAGATGGGAGCCAAGTCAAAGAGCACTGATTTAGTATTAGAGGGACATGTTCCAAAAGGAGAGATTAGACTTACTCCTCCAAGAACACAGGCAGAGGGCAGAGCATCATCTGTAGAGATAGACGCTGAAGGGAAGGTGAAAAGCAAGATAAAAAtgccaaaaatgaaaatgccttcTTTTGGCATAACCAagaaagggggaggggtgggcATTGGCGACCCAGAGGCTGAAGCCAAGGTCAAGAAAGGAAAAGTGGATGTCAAAGGGCATGAAATCAGTGTGGAAGGCCCAGAGGGAAAGGTGAGAACGCCCAAATTAAAATTCCCCAAATTTAAGATTTCAACTCCTAAAGGCAAGGTCCCAGATAGGGAAGCTGACCTCAAAGTAGACAGTGAAGCAAGTGTAAAAGGTGGTATGCAAGCGCCGGATGTCACTATCAAAATGCCAAAGTTCTCCATGCCAAAATTTGGATCTAAGGAAGGTGACCTTGATGTTGGGCCATCGGATGCTAGCATAGAGGGCAAAAGCAAGATCAAAATGCCTTCCCTTGAAATTTCTCTGCCAGCTGTAAAACAACCAGAAGGGGAAGTCTTATTACCAAAGGCTGAAGTAGATGTATCTGAAGAGGATATTAAAGGATATGAAGGACATTTGAAGATCCCTAAAATGCCAACTATTGAGATCTCAGCCCCCAAAATTGAACTGGATGTTGGTTTGCCTAAAGCTAAAGCTGAGGCCTCACATGACTCTACTGCAGGTGCAAAAACTGAAGGCGATGGAAAATATGAGGGACCTGATTTCACACTAAAAATGCCCAAGGTGAGTTTGCCTACATTTGGCATCTCTGGAAGCAAGGAAAAGGACATTGAACTTGATATCAGTGGGGCTAAACCAGACATGAGCACCACCCAGAAAGTTAATATAAAAGTAGCTTCACCAGATCTGGACATTGAGGGGGGTGAAGGCAAACTGAAGATGCCAAAAATACAGTTGCCTAAAGTGGACATATCTGTACCTAAAGGCAAATCTGGAGATGCTGTAGTCTCTCTTCCTGAAGGTGAGGTAGACACTGGGGAAGGGAGGTTTAAGATGCCATCTTTTGGACTTCCAAAGTTTTCTGTCCCCACAGTCAAAGCTCCAGATTTCAACCTTGAAGTCAGTGGAGGAAAAGGCAAACATGAACATGAAATCAGTTACCCTGAATTGAATGTAAAGGGGAAGAAAGTGGAAGGATCCGGCCCAACTGTAGATGTGGATtcatctgattttaaaatgaaaatgcctaAAATCAAAATGCCTTCAATTGGTATAGCAGGTCCAGATTTTGAAGGCACAGACATAGAGCTGGATATAGGCTTACCAAAAGCTGATGCggaaaagggaaaaatcaaAGTTGAGCCTCCAAAGGGAGACATTGATGTGTCTGGCagcagtggaaaaataaaagggcCAAAGGTTAAAGGTACAAAGTTTAATATCGGGATGCCAAAAAACAAGGGGGTAATGGATGCAGGCTTGGAAGCTGAGATAAAGAAGCCAGAAGTAGAAGAAGGTGATGCAGGGGgtagatttaaaattaaaatgcccAAATTTGGTGGCAAGGGCACAATTGAGGTACCTGAACTTGAAGCCGATGTTACAGGGCCAGAAGGCGATGCCAGATTCAAAATGCCAAAAATGTCCCTTCCAGATATAGGATTTTCAGTTTCTAAAGAAGAAGGGCCAGATGCCAGTCTAGATACTTCCCATCCCAAAATAGATCTGGACTCTAAAGGTGGACTCAAGGTCAAGGGTCCTAAAGTGGATCTACCACAGGCTGAGTTTGATGGCCCAGAATCCAGTAGTAAAACAGGCAGATTTAAGCTCCCTGATGTGGAATTGTCAGGTCCTAAAATCAAAGGGCATGGAGACCTTGATATCAGGGGTAGAGAGGCTGACCTCAGCCACCTAGAGGACAAAGAGCGCATTAAGCTGCAAATGCCTAAGATCTCATTACCTTCAGTCGGATTCTCAGACTCCAAGGAGTTAATTGTGCCAGAGGGTGACACAGAGTGCAAAATGAAAGGACCTAAATTTGAAATCAAAGCCCCCCAGCTTGAAATCAAAGTCCCTGAACTGGACATCAAAGCTCCAGAATTCCAAATCAAGTCCCCACAAATAGAGATGGGAGATCCTGAGACAAAGGAGAAGAAAGTCAAAGCCAAGATACCAAAGTTTGGAATTGCCCTACCGAGCATCACCCAGCCTGAAGCAGATGTAAGCATGTCTGCACCAGATGTTACAGTGAAAGGGCctgatgtaaaattaaaaaaggacacCAAAGCTCCTGAGGTGCCTTCCACAGCTGTAGCAGGGGATGGAGATTATGAAGGCCCTAAGATGCCAAAAGTAAAgaaagctgtgtttgtttttgtgaaaccCAAAACCAATGGGTCAGATGCCTCAGCCAGCCACTCTGAAGGAGAGGCAAGCTTGGGCTCCACTGAAGCCAAATATAAAGTGCCAAAGATCAAGATGAAGCCAAGTTTTGGGAAATCAAACTCCAAGTCCAAAGGAGCAGAGTTTAAtggagaggcagagaaagacTCAAGAGAAGAGGACGGGAAGTCAAAGGCAGGCAAACTGAAAATGCCCAAAGTCACCTTCTCTCCGGGAAAAACTGGGTCATTTGACGTGACTTTGAATGGTTCGGGGTCTGCCGGGTCAAAGAAGGAAGAGGTGTCAGGGACTCGAGTCAACAGCAGAAGCAGTCCGGCATTCCAGAATGGATCCCAGGAAGACAAATCCCTTTTTGGAAAGCTGAAGCTGCCCCAGATTGAATTCTCCTCTCCGTATCCCAAAGtgggtggaggggagggggatgCTGAGATGAGTATGAAGTTGGTAAAGACTGAAGATGCTTCTGGGTCTGATGCGGAAAGCAAAGGGATGAAATTCAAGTCACCCAAAATTTCCTTCCCAGGCTTCAAAAAGAAGATGGGTGAGGAAGAGAAGTCAGGGGCATTGGTGTCATCCAAAGCCAGGACAGAAATGGTATTAATGGAACCAGAGGAAAGAGAAGGTTCTGAATCTCCCAAAGTCTCTATTGGATTTGTCTCTGGGAGAGTCCGGGGAGATCCAAAGAGTACTGGCGCAGCAGGTAGTTATGTGACCGCGAAAACTGGGTCGAGAGACAAGGAGTCAGGTGACAAACGAGAGACGGAGGTCAAGGACAAGTCACCCCGATTCAAGATTCCCAAGTTCAGCCTGAGCCCACGATCCACAGGGATTCTTCATATTACAACAGAAGGCTCTCCGAAGAGCAGCAGAGATTCCTTGCAGCGATCCGAAGATGAGGAACGCTCTTCTGGTTTCAAGATGCAAATGCCAAGGATAGGATTCTCGGCCCAGCACACTTCCGAAGAGCAGACAGTTACAGCTGAGGAGGGCAGCGTTGCCATtgtaacaaaaacatcaaagcaCACACTAACAGAATCAGGGACTGACAAATCCACTACCATTTGAGTGAATGGATAACCATTTATCAACCTGAGGACaatattagagagagagagagagagagagtgagagagagagagtgagagagagtgagagtgagagagagaagtgaagCCACCaccatttatctttttttaagaattgaccactttattttattgttgttattgttgtttttctattttatttctgattctTTTTAATTCTCATTGTTTTACTAGCTCAACTCTGAATGTTGACttcactaaaataaaaaaaaaaactaaatcatgaAAAAGAAGAATATGTAACCATTTCTCCGATGTAAAGTGACTGCCACAAACCTGCCCCATTCTGAATAGAATGCTGATCATGGTAAAATTATTAGATTGGACGCAAGAATGTGTTTTAACAAACTGACactgtggttttaaatgtatggtgTTTACGattattaaatgcaatcaaATTAGCTTGTTAAGGGGAACGAGTTGCTTTGGCACTAACAGATACTGAAACACGTGGTTTTAACTTTCACTTGCTAGTACAATTGatgattgattttaaaaagaaaaagaaaaaaaatgtgtgcctCTATGTTCAATGGTCTGCAAAATGTGAGGTTTTTCAAGCAGTCTGAAGAAGTTACTTTcctgtttgcttttaaaatatatatatgatccaTTGAGaatggcatttttgttttcttaattccAGGTGAAAGTGTTATGAGGTGAActgcaattacatttacagcCTGCTTTGTATTAAGCTACCAGGATCTGATTTTGTCATAAAGACAGATTGATACTATAATGTATGTTTCTAGATGGGACTAGGCCTATCTTggacattttccttttcttctgaaTGTACTTAGGATAATATGAAGATACATGACTTTCCTGTCCTTAAACGTTTACTGTGgtcattaaacaaacaaaagcaaagattACAAAGCCCGGAAAAATTGAGAATGCAATATTGGCCTGCTGAAGCCTTTAGTTAAACATGTCACAAGAtaggaaaaacattaaattaaacattaaacatttatggCAAATTGGATGTTTTGTCGACTTTGTGGTGACAAAGTAAACTATACAAATTCATACATAACTTCATACAGtactttaatttattgaaacattcaagcagtataaaatatattatcaatGGCAGTAGGAGAAGCTTTGCCTTTTGCATTATTCCAAGGCATCAAGTACTATGTAGATTTCAGTTTGCAAGGAGTGCACCACGACTGCTTTTATGTATTGTGATGTTTTGGTACACCCATTTATGGTGAGAGCTTGTACATCTACCACTCCAATAATGCCCTTTGTCAAAAAGCTGGGATTTTAAGACAGACATCACAGAGAAAAGTGTAAAGAACATAGCTGTCCTCCATCCAACAGAACACCACTGGGATTAACTGCAGCAGTGAAGCAGCCATAGAACCCAGCCTCCCTGACTTCACAGGAAAGCGTGCCATGACAGGAACGTCACAGTATCCAT

Function

GO: NA

KEGG:

id description
K23934 AHNAK; neuroblast differentiation-associated protein AHNAK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56511 lncRNA upstream 54117 36406043 ~ 36408735 (+) True G45343
TU56449 lncRNA upstream 274910 36160134 ~ 36187942 (+) True G45301
TU56419 lncRNA upstream 345521 36114055 ~ 36117331 (+) True G45276
TU56416 lncRNA upstream 396874 36064830 ~ 36065978 (+) False AMCG00013560
TU56356 lncRNA upstream 478419 35974238 ~ 35984433 (+) True G45230
TU56543 lncRNA downstream 137343 36613735 ~ 36613942 (+) True G45373
TU56546 lncRNA downstream 163250 36639642 ~ 36641119 (+) False AMCG00013571
TU56565 lncRNA downstream 222406 36698798 ~ 36700063 (+) True G45395
TU56567 lncRNA downstream 228260 36704652 ~ 36704893 (+) True G45397
TU56573 lncRNA downstream 243260 36719652 ~ 36719989 (+) True G45403
AMCG00013568 mRNA upstream 18122 36434886 ~ 36444730 (+) True AMCG00013568
AMCG00013564 mRNA upstream 59834 36380969 ~ 36403018 (+) True AMCG00013564
AMCG00013566 mRNA upstream 99701 36362945 ~ 36363151 (+) False AMCG00013566
AMCG00013559 mRNA upstream 330593 36119566 ~ 36132259 (+) True AMCG00013559
AMCG00013558 mRNA upstream 351789 36097155 ~ 36111063 (+) True AMCG00013558
AMCG00013571 mRNA downstream 144010 36620402 ~ 36646066 (+) True AMCG00013571
AMCG00013573 mRNA downstream 215760 36692152 ~ 36693141 (+) True AMCG00013573
AMCG00013570 mRNA downstream 232983 36709375 ~ 36712969 (+) True AMCG00013570
AMCG00013574 mRNA downstream 317649 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013576 mRNA downstream 330366 36806758 ~ 36810451 (+) True AMCG00013576
TU56506 other upstream 58951 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 92765 36338262 ~ 36370087 (+) True AMCG00013566
TU56332 other upstream 803019 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 1124800 35334890 ~ 35338052 (+) True G45174
TU56162 other upstream 2347913 34114673 ~ 34114939 (+) True G45072
TU56545 other downstream 154585 36630977 ~ 36638148 (+) False AMCG00013571
TU56576 other downstream 260285 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 398515 36874907 ~ 36877603 (+) True G45439
TU56708 other downstream 637110 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 839094 37315486 ~ 37320331 (+) False AMCG00013595

Expression Profile