RNA id: AMCG00013570


Basic Information

Item Value
RNA id AMCG00013570
length 1991
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00013570
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36709375 ~ 36712969 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGATGGTGCTGACGTCACTAGAGCTGCGACGCGTATTTCCGGCGGAAGGGGAATTTTCCGGTAGTGTAACGCACGTGTTTATTTGTGTTAGAGCGGCGTAACTATTGgcgtgtttttaaatgtgtttccatgtaaatactaatatatatctatatatttattaacgTAAGTCATGTCTGCGAGGCATAAAGATATATCATATTTGAGCAGCGAGGGAGAATCGGACTCTGACAGAGAACCGCTGCCTTCTGCACAGCCACAACAACAAACCCATGCAGCACACAGGATCACGAAATTTCAGTGTCCTGCGGATTTCATTTCTTCTCCCTACAAACCCTGTAGTGGTACGAGCTTGAAGAACTTGACCAACAGCAAAACAGAAGTATGGCTGATCAAAGCGCCAGCCAACTTCAACCCAGAGAGctttgCTGGCACCAAGATTCCCCTGATTGGCACTGAGACATTGAAACCGAAGAGCAGCGGTGGCACCCAGCAGGTGTACAACATCTTTAGCACCCCAAAAGAACAAAGGGATATGTGCTTGTTGACATCAAGTGGAGATTCAGGCAAGATTCTGTGCACCCCGGGGTTTGCAGGCATCATCAACATCTGTGAGACTTTTGGCGACTGTAACGCCAACCAGGCCCCCAAAGCTATACCAGCAAGCCCCCCTCCTCGAATCCCAGAAGGGCTGAAGCAGAGATTCCAACCGTTTGGCAGCGAAACCCCCTGCGGCACAGGCAGGAAGAGGTGTCGCGAGGACGATCCTGCTTCCTCGTCTGCATCAGCCAAGAGATTGAAAACTGAGCCACCTGGGTCCCCAGTCCTGCAGGAGCAGGGTGCCATTCGGAAGActaagaagaaaagaaagaaagaaaaacggGCTGAACCGGAGGAGATGGAAGCAGACGTGGACCTAGCGGCAGCGCCTGAGGAGCCGGTTCTACATGAGATGACAAcagaaaggaagaagaaaaagaagacaaagaaagagaaggacCAAGGGGGGACAGAACAGAGCCCTTGGGAAAAGACAGAGGAGGAGTCTGGAATGAAGGAAGAGGAAGTGGAGGTCAAGATCGAGCCACTGCAGTCTGGCTGGGGGGATGAAGAGGATGTgagaaggaaaaagaagaagaagaaaaataatttaaaactggaGAACTAACTtgctttatgaaaatgtaaaaacaatatgtgGTTCCCAGGACTAATGATCACCTCTTCCTCAGCAAGCATGTAACTAATGAGATAACGGGACACTCTCAGTGGTCAATACTTACTGTTCCCTCATCACAATTATTTGTTACCATGTAAAATTTGtaagaaatattttgaatgtgcACCTTTTCCCTTTGTGATGTTCCAGTATATCTTTACCTGAGTTGTTTGGTacttttttgattaattaaatgttcgCTGAAATCAAATGCCTCAAACCTGCTATATTTATGTACAGAATTAAGTGTTATCTGCTGTGCAGGTTGGGCACATGTATGGCTGCAGTAGTACACAACACTCACCGGCAGGTAGTGCTATTACACTATAATGACTTTTCTAAGGGGGGCTGGTTATGAAACCCTCGTGTGTGTGCCGACatgactttgttttcttttccatccAGTTCTGCAGTGACGCATGGCCGTATGATCTAAaaggaatttttttttctcccaacaTCATTATCATACGCAGGCTGTAGGGTATAAAATATGCCTCCTACATAGCATAACCGAAATTGAGTTCAGcatgttaaaatacaatctTAATCAGTCCTTTATGTACCTGTATGCTAGcttttattatacagtatttggTAAGTTTATCTACAACGGAACCAGTATAAAGGTTGCATGAACCTAATCGTATACCGTATTATTTAAAGTTGATTCTGCAAATGTCCcttctaaataaaatgcattatttttaataataaaccaCATACACGTTTCGGtgcattgtgtatatatatattgcattcttCTGTTGGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56567 lncRNA upstream 4482 36704652 ~ 36704893 (+) True G45397
TU56565 lncRNA upstream 9312 36698798 ~ 36700063 (+) True G45395
TU56546 lncRNA upstream 68256 36639642 ~ 36641119 (+) False AMCG00013571
TU56543 lncRNA upstream 95433 36613735 ~ 36613942 (+) True G45373
TU56511 lncRNA upstream 300640 36406043 ~ 36408735 (+) True G45343
TU56573 lncRNA downstream 6683 36719652 ~ 36719989 (+) True G45403
TU56575 lncRNA downstream 14981 36727950 ~ 36729956 (+) True G45405
TU56578 lncRNA downstream 69600 36782569 ~ 36783620 (+) True G45408
TU56685 lncRNA downstream 350988 37063957 ~ 37064264 (+) True G45499
TU56746 lncRNA downstream 538232 37251201 ~ 37290765 (+) True G45538
AMCG00013573 mRNA upstream 16234 36692152 ~ 36693141 (+) True AMCG00013573
AMCG00013571 mRNA upstream 63309 36620402 ~ 36646066 (+) True AMCG00013571
AMCG00013567 mRNA upstream 232983 36462852 ~ 36476392 (+) True AMCG00013567
AMCG00013568 mRNA upstream 264645 36434886 ~ 36444730 (+) True AMCG00013568
AMCG00013564 mRNA upstream 306357 36380969 ~ 36403018 (+) True AMCG00013564
AMCG00013574 mRNA downstream 81072 36794041 ~ 36797976 (+) True AMCG00013574
AMCG00013576 mRNA downstream 93789 36806758 ~ 36810451 (+) True AMCG00013576
AMCG00013575 mRNA downstream 130559 36843528 ~ 36860797 (+) True AMCG00013575
AMCG00013583 mRNA downstream 264303 36977272 ~ 37013396 (+) True AMCG00013583
AMCG00013582 mRNA downstream 305482 37018451 ~ 37034474 (+) True AMCG00013582
TU56545 other upstream 71227 36630977 ~ 36638148 (+) False AMCG00013571
TU56506 other upstream 305474 36403354 ~ 36403901 (+) True G45338
TU56494 other upstream 339288 36338262 ~ 36370087 (+) True AMCG00013566
TU56332 other upstream 1049542 35655302 ~ 35659833 (+) True G45209
TU56293 other upstream 1371323 35334890 ~ 35338052 (+) True G45174
TU56576 other downstream 23708 36736677 ~ 36738479 (+) True G45406
TU56611 other downstream 161938 36874907 ~ 36877603 (+) True G45439
TU56708 other downstream 400533 37113502 ~ 37120571 (+) False AMCG00013587
TU56759 other downstream 602517 37315486 ~ 37320331 (+) False AMCG00013595
TU57084 other downstream 1341935 38054904 ~ 38058834 (+) False AMCG00013629

Expression Profile